PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID BGIOSGA021939-PA
Common NameOsI_21616
Organism
Oryza sativa subsp. indica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family ERF
Protein Properties Length: 213aa    MW: 22850.1 Da    PI: 4.2493
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
BGIOSGA021939-PAgenomeRISView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP2431.1e-13347855
               AP2  8 wdkkrgrWvAeIrd.psengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                      +++ +grW+A+I   +   g +k+ +lg++ t eeAa+a++ a+ +++g
  BGIOSGA021939-PA  3 RHHHNGRWEARIGRvF---G-NKYLYLGTYSTQEEAARAYDIAAIEYRG 47
                      7889*******99966...3.6*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5103216.133155IPR001471AP2/ERF domain
PfamPF008473.5E-9347IPR001471AP2/ERF domain
SMARTSM003807.3E-22361IPR001471AP2/ERF domain
SuperFamilySSF541711.63E-15357IPR016177DNA-binding domain
CDDcd000182.14E-22357No hitNo description
Gene3DG3DSA:3.30.730.101.4E-15356IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 213 aa     Download sequence    Send to blast
MSRHHHNGRW EARIGRVFGN KYLYLGTYST QEEAARAYDI AAIEYRGINA VTNFDLSTYI  60
RWLKPPSSSS AAGTPHHHGG GMVVGADRVL APAQSYPISA AADDDVAGCW RPLPSPSSST  120
TTALSLLLRS SMFQELVARQ PVVEGDDGQL AVVSGDDADA DADSDVKEPP PESEYGEVFA  180
SDEAAAAAAY GCSMYELDDS FALIDDSVWN CLI
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0034870.0AP003487.2 Oryza sativa Japonica Group genomic DNA, chromosome 6, BAC clone:OSJNBa0007O20.
GenBankAP0037670.0AP003767.3 Oryza sativa Japonica Group genomic DNA, chromosome 6, PAC clone:P0036F10.
GenBankAP0149620.0AP014962.1 Oryza sativa Japonica Group DNA, chromosome 6, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015641668.11e-154AP2-like ethylene-responsive transcription factor At1g16060
TrEMBLB8B2M41e-155B8B2M4_ORYSI; Uncharacterized protein
STRINGORUFI06G03000.11e-153(Oryza rufipogon)
STRINGOS06T0145700-001e-153(Oryza sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP41623473
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G54320.22e-28ERF family protein