PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID BGIOSGA022089-PA
Common NameOsI_21322
Organism
Oryza sativa subsp. indica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family B3
Protein Properties Length: 261aa    MW: 28829.1 Da    PI: 10.9745
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
BGIOSGA022089-PAgenomeRISView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B379.92.6e-2537138197
                       EEEE-..-HHHHTT-EE--HHH.HTT......---..--SEEEEEETTS..-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE- CS
                B3   1 ffkvltpsdvlksgrlvlpkkfaeeh......ggkkeesktltledesg..rsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkld 85 
                       f+kv tpsdv+k++rlv+pk++ae++         ++ ++ l +ed +g   +W+++++y+ +s++yv+tkGW+++v++++L +gD+v F   
  BGIOSGA022089-PA  37 FEKVVTPSDVGKLNRLVVPKHYAEKYfplgpaARTSPAGTVLCFEDARGgdSTWRFRYSYWSSSQSYVITKGWSRYVRDKRLAAGDTVSFC-- 127
                       99***************************999445557789*****99999***************************************9.. PP

                       SSSEE..EEEEE CS
                B3  86 grsefelvvkvf 97 
                        r +++l++  +
  BGIOSGA022089-PA 128 -RAGARLFIDCR 138
                       .44555666655 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.106.2E-3431150IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019367.59E-2633133IPR015300DNA-binding pseudobarrel domain
CDDcd100171.14E-1836126No hitNo description
PfamPF023621.5E-2237139IPR003340B3 DNA binding domain
SMARTSM010191.3E-1837141IPR003340B3 DNA binding domain
PROSITE profilePS5086312.05537141IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0016021Cellular Componentintegral component of membrane
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 261 aa     Download sequence    Send to blast
MATIVAWESR NLQLQGGGGG HGGGGGGGGG ERREYMFEKV VTPSDVGKLN RLVVPKHYAE  60
KYFPLGPAAR TSPAGTVLCF EDARGGDSTW RFRYSYWSSS QSYVITKGWS RYVRDKRLAA  120
GDTVSFCRAG ARLFIDCRKR AASVSSSSLV PPALIKVRNP SWAEYVSWAV QWLTAYWAFS  180
RSVAGSLCSM APLRGAKRRR RRLQWRRPLR RVACPEQIAR RIDADGAPGE STALRARSYG  240
CIRVFLVLSL LLLAVEVAAY L
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5os9_A3e-41331404113B3 domain-containing transcription factor NGA1
5os9_B3e-41331404113B3 domain-containing transcription factor NGA1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1196201KRRRRR
2196202KRRRRRL
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Os.366720.0root| stem
Expression -- Microarray ? help Back to Top
Source ID E-value
GEO1166401490.0
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0006160.0AP000616.2 Oryza sativa Japonica Group genomic DNA, chromosome 6, clone:P0514G12.
GenBankAP0011290.0AP001129.1 Oryza sativa Japonica Group genomic DNA, chromosome 6, PAC clone:P0644B06.
GenBankAP0149620.0AP014962.1 Oryza sativa Japonica Group DNA, chromosome 6, cultivar: Nipponbare, complete sequence.
GenBankKC0191720.0KC019172.1 Oryza sativa Indica Group cultivar TN1 insect-resistance protein (BPH29) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015642534.11e-110B3 domain-containing protein Os06g0107800
SwissprotQ5VS551e-111Y6078_ORYSJ; B3 domain-containing protein Os06g0107800
TrEMBLA2Y8E20.0A2Y8E2_ORYSI; Uncharacterized protein
STRINGORUFI06G00530.11e-109(Oryza rufipogon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP129472934
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G61970.18e-42B3 family protein