PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID BGIOSGA022099-PA
Common NameOsI_21301
Organism
Oryza sativa subsp. indica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family MYB_related
Protein Properties Length: 689aa    MW: 74855.7 Da    PI: 6.8055
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
BGIOSGA022099-PAgenomeRISView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding254.3e-084078141
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHH CS
   Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqck 41
                      r +WT  E++++++a +++  + Wk+I +++g  +t  q++
  BGIOSGA022099-PA 40 RESWTDPEHDKFLEALQLFDRD-WKKIEAYVG-SKTVIQLV 78
                      789*****************77.*********.99998875 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466894.21E-102884IPR009057Homeodomain-like
PROSITE profilePS5129310.6573889IPR017884SANT domain
TIGRFAMsTIGR015577.0E-93876IPR006447Myb domain, plants
SMARTSM007177.3E-73987IPR001005SANT/Myb domain
PfamPF002491.2E-54076IPR001005SANT/Myb domain
CDDcd001671.39E-44285No hitNo description
PfamPF008921.3E-9367504IPR000620EamA domain
SuperFamilySSF1034819.55E-6401505No hitNo description
PfamPF008921.2E-7526665IPR000620EamA domain
SuperFamilySSF1034814.45E-8595670No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0055085Biological Processtransmembrane transport
GO:0005634Cellular Componentnucleus
GO:0016021Cellular Componentintegral component of membrane
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 689 aa     Download sequence    Send to blast
MSSAPQQLLD SSSPGPGPGP EVEDDGGRRV RKPYTITKSR ESWTDPEHDK FLEALQLFDR  60
DWKKIEAYVG SKTVIQLVAF VTEYFRVLQF LNLPGGDLII NLGVLAAPQV VLPQQASHLM  120
EQGCLIPMDI SPVARNFNAN DVFSSWDSAL AQSFSPRHTH GAANNCSSSI ESQSGTCPTS  180
EAIEQEIMLP TLRAMPDFAQ VYNFLGSIFD PETSGHLQRL REMDPIDVET WWIPVTTCGL  240
DNLDIVLLLM KNLSINLTNP NFEAHIFALP DILILYSCVE SEQWKSLIVV AEEDDVRCSS  300
GTVCVLNILD RIPPVHSYRS CSTSVYISSK KKKKKKKKKR LGAMVQGASG GGWSSKVEEG  360
VIVGGLLVVQ CILAGYVVFV DHVLSLGANP LSLIVLGAVA SSLFFLPFAV VLERKKWPSK  420
ISRTLMAQFV FIALGGTTVF QELMLLGIKK TTPAIASAMP NLSPGLIFII AACFRLEKFD  480
KGCKYTRAKI LGTLVCLVGA MAMSFLQSPV SSSPQLTTTS YYDWILGCFY LFLAVVVLSI  540
YTVLQAATLV SFPAPLTMCS VTSMMGAVFT AILQFIVDGK IDMGSPRIDE TIISTIVLMG  600
GGVVGGCVVF QTWCIGKRGP LLVSIFGPVQ TVCSALLSAL LFSQLLCLGS LAGMVLMFCG  660
LYIVLWAKSK EGHSIIHLEG GDVEKALLS
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1329338KKKKKKKKKK
2331339KKKKKKKKR
3333339KKKKKKR
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Os.448720.0callus| panicle| stem
Expression -- Microarray ? help Back to Top
Source ID E-value
GEO1154659170.0
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1119560.0AK111956.1 Oryza sativa Japonica Group cDNA clone:001-028-G05, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025882163.10.0WAT1-related protein At5g47470
RefseqXP_025882164.10.0WAT1-related protein At5g47470
TrEMBLB8B1I00.0B8B1I0_ORYSI; Uncharacterized protein
STRINGOGLUM06G00310.10.0(Oryza glumipatula)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G09600.12e-56MYB_related family protein