PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID BGIOSGA022169-PA
Common NameOsI_21346
Organism
Oryza sativa subsp. indica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family MYB
Protein Properties Length: 328aa    MW: 35407.9 Da    PI: 6.0912
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
BGIOSGA022169-PAgenomeRISView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding55.61.2e-171562148
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
   Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                      +g+WT+eEd+llv+++ + G g+W++ ++  g++R++k+c++rw +yl
  BGIOSGA022169-PA 15 KGPWTPEEDKLLVEYIGKNGHGSWRRLPKLAGLNRCGKSCRLRWTNYL 62
                      79********************************************97 PP
2Myb_DNA-binding48.52e-1568113148
                       TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
   Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                       rg ++ +E+ l++++++ lG++ W++Ia ++  gRt++++k++w+++l
  BGIOSGA022169-PA  68 RGGFSDDEERLIIHLHATLGNK-WSSIATKLK-GRTDNEIKNYWNTHL 113
                       7889******************.********9.************996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.601.1E-23765IPR009057Homeodomain-like
PROSITE profilePS5129419.151062IPR017930Myb domain
SuperFamilySSF466892.01E-2912109IPR009057Homeodomain-like
SMARTSM007172.1E-141464IPR001005SANT/Myb domain
PfamPF002491.7E-161562IPR001005SANT/Myb domain
CDDcd001672.34E-111762No hitNo description
PROSITE profilePS5129425.78563117IPR017930Myb domain
Gene3DG3DSA:1.10.10.605.0E-2566117IPR009057Homeodomain-like
SMARTSM007171.1E-1467115IPR001005SANT/Myb domain
PfamPF002492.8E-1468113IPR001005SANT/Myb domain
CDDcd001671.36E-1171113No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 328 aa     Download sequence    Send to blast
MGRSPCCEQD ADVKKGPWTP EEDKLLVEYI GKNGHGSWRR LPKLAGLNRC GKSCRLRWTN  60
YLRPDIKRGG FSDDEERLII HLHATLGNKW SSIATKLKGR TDNEIKNYWN THLRKKLLSQ  120
GIDPVTHRPR TDLLAGLPNL LAAANLGGAA HQLPLDLNAI KLQADAAKFQ ILQGLLRQQQ  180
LAGVDLSRLG QYNGNYDNLP PLTNDSCTQQ TQPAMSSMSP DSLLNRISSG ISGDMLGSPE  240
LCHGGDGLSS PELGQGGPSA SNMTTSPMAP PPPMVAADDH QCNTNTPSGG GDGMSCEQTP  300
ASSTFDGLNL DDIDMEGCWA MTDILLAE
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gv2_A6e-28151174105MYB PROTO-ONCOGENE PROTEIN
1mse_C6e-28151174105C-Myb DNA-Binding Domain
1msf_C6e-28151174105C-Myb DNA-Binding Domain
Search in ModeBase
Expression -- Microarray ? help Back to Top
Source ID E-value
GEO1154659910.0
Expression -- Description ? help Back to Top
Source Description
UniprotDEVELOPMENTAL STAGE: Specifically and transiently expressed in root endodermal cells overlying the early stages of lateral root primordia formation. {ECO:0000269|PubMed:24902892, ECO:0000269|PubMed:25482809}.
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that acts as negative regulator of lateral root (LR) development. Required for normal auxin responses during LR development. May be part of a negative feedback loop stimulated specifically in the endodermis upon LR initiation to ensure that LRs are formed only in the correct place. {ECO:0000269|PubMed:24902892}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by abscisic acid (ABA), auxin and gravity in roots. {ECO:0000269|PubMed:24902892}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0015520.0AP001552.1 Oryza sativa Japonica Group geneomic DNA, chromosome 6, PAC clone:P0029D06.
GenBankAP0149620.0AP014962.1 Oryza sativa Japonica Group DNA, chromosome 6, cultivar: Nipponbare, complete sequence.
GenBankAY4593420.0AY459342.1 Oryza sativa (japonica cultivar-group) clone CLC13210-1 R2R3-MYB gene region.
GenBankCP0126140.0CP012614.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 6 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015641987.10.0transcription factor MYB53
SwissprotQ9S9Z24e-80MYB93_ARATH; Transcription factor MYB93
TrEMBLB8B1K40.0B8B1K4_ORYSI; Uncharacterized protein
STRINGORUFI06G00810.10.0(Oryza rufipogon)
STRINGOBART06G00820.10.0(Oryza barthii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP55293158
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G34670.13e-74myb domain protein 93
Publications ? help Back to Top
  1. Gibbs DJ,Coates JC
    AtMYB93 is an endodermis-specific transcriptional regulator of lateral root development in arabidopsis.
    Plant Signal Behav, 2014. 9(10): p. e970406
    [PMID:25482809]