PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

BGIOSGA022172-PA

Common Name

OsI_21351

Organism

Oryza sativa subsp. indica

Taxonomic ID

39946

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa

Family

Protein Properties

Length: 176aa MW: 18973.8 Da PI: 5.2481

Description

B3 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
BGIOSGA022172-PA	genome	RIS	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	52.4	9.5e-17	61	153	5	98
-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-..SS.SEE..EE CS B3 5 ltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkld..gr.sefelvv 94 +s+ + + ++++p +f h + ++e +t + ++ g+sW + +++ ++ l +GW+eF+ +n+L +gD +vF+l+ g + e+ v BGIOSGA022172-PA 61 IAKSHLHPKFQMWIPPRFQ--HRLAEPEARTAAVLHSGGKSWATSY--CGHLKMKKLDAGWSEFAVDNRLLVGDACVFELVamGAaGGLEFQV 149 34566667799*****6..6666778889***********..*****************************76446667777777 PP EEE- CS B3 95 kvfr 98 +++r BGIOSGA022172-PA 150 QILR 153 7766 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:2.40.330.10	2.7E-19	52	153	IPR015300	DNA-binding pseudobarrel domain
SuperFamily	SSF101936	3.53E-18	53	153	IPR015300	DNA-binding pseudobarrel domain
CDD	cd10017	4.08E-15	55	153	No hit	No description
SMART	SM01019	0.0022	57	155	IPR003340	B3 DNA binding domain
PROSITE profile	PS50863	12.957	57	155	IPR003340	B3 DNA binding domain
Pfam	PF02362	9.0E-15	60	153	IPR003340	B3 DNA binding domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 176 aa Download sequence Send to blast
MELDTDPTKL KAKPIIKPKV EPCDDDDELP PPPPPPASGS GEDWEATTPL AAGNPFFTAL 60 IAKSHLHPKF QMWIPPRFQH RLAEPEARTA AVLHSGGKSW ATSYCGHLKM KKLDAGWSEF 120 AVDNRLLVGD ACVFELVAMG AAGGLEFQVQ ILRGGLPAEV VTSKGLTSDQ PILIVD

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Os.20309	0.0	panicle

Expression -- Microarray ? help Back to Top
Source	ID	E-value
GEO	32992129	0.0

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK106920	0.0	AK106920.1 Oryza sativa Japonica Group cDNA clone:002-119-B04, full insert sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015643738.1	1e-110	B3 domain-containing protein Os06g0112300
Refseq	XP_015643739.1	1e-110	B3 domain-containing protein Os06g0112300
Refseq	XP_025882046.1	1e-110	B3 domain-containing protein Os06g0112300
Swissprot	Q9LHY9	1e-111	Y6112_ORYSJ; B3 domain-containing protein Os06g0112300
TrEMBL	A0A0E0HJU6	1e-125	A0A0E0HJU6_ORYNI; Uncharacterized protein
TrEMBL	A2Y8H3	1e-125	A2Y8H3_ORYSI; Uncharacterized protein
STRING	ORUFI06G00790.1	1e-108	(Oryza rufipogon)
STRING	OS06T0112300-01	1e-110	(Oryza sativa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP12046	19	33

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G58280.1	2e-07	B3 family protein

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764]