PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID BGIOSGA022425-PA
Common NameOsI_21915
Organism
Oryza sativa subsp. indica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family MYB_related
Protein Properties Length: 413aa    MW: 44393.1 Da    PI: 9.2244
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
BGIOSGA022425-PAgenomeRISView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding301.2e-09364411347
                       SS-HHHHHHHHHHHHHTTTT-HHHHHHHHT...TTS-HHHHHHHHHHH CS
   Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmg...kgRtlkqcksrwqky 47 
                       +W + E+e l ++v+q+G+g+Wk I    +    gR + ++k++w++ 
  BGIOSGA022425-PA 364 KWCALEEETLRKGVEQYGNGNWKDILTNNPdvfIGRKAMDLKDKWRNM 411
                       68888****************************99***********97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.606.1E-12357413IPR009057Homeodomain-like
PROSITE profilePS5129414.122357413IPR017930Myb domain
SuperFamilySSF466894.91E-13359412IPR009057Homeodomain-like
CDDcd116602.70E-16363413No hitNo description
PfamPF002491.4E-7364411IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009901Biological Processanther dehiscence
GO:0010152Biological Processpollen maturation
GO:0043067Biological Processregulation of programmed cell death
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 413 aa     Download sequence    Send to blast
MLNNCLFFLS PAHVRTNLNS PLPPRPGPKT FHRSRARGTA RRFAPRPTPP PTSPLPPAKP  60
SQISPAAPAA AAAAAAHLAV AAYLAVSAPD FDAAAGALFG RPGGRARRAV EEGGAAALAS  120
DEADAVADQF EAAVGNSFSQ TVLRGLWGDR AAAEERVREL LAVEWAAIGQ SRLEMAAERI  180
VGDGAIETWR AADEVTRAKY RLLAGEQRAR EIEGKLGETI PQGNQISTPE VHKVMDALKS  240
SCANLHSVVE DPLPAAKAAA DEVLAARMDK AVDLNAGEVS NQPTACDIAG PSAPADNLDA  300
PRKGTAASLM DWNPTARTFQ WEDSPDPDGS RSPIHRPQLP SPRRTTFSPL QPADNKAKRR  360
KARKWCALEE ETLRKGVEQY GNGNWKDILT NNPDVFIGRK AMDLKDKWRN MMR
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Os.163890.0callus| leaf| seed
Expression -- Microarray ? help Back to Top
Source ID E-value
GEO403884180.0
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY4290170.0AY429017.1 Oryza sativa (japonica cultivar-group) ANTHER INDEHISCENCE1 (AID1) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015641699.10.0uncharacterized protein LOC4340310
TrEMBLA2YA050.0A2YA05_ORYSI; Uncharacterized protein
STRINGONIVA06G06040.10.0(Oryza nivara)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP31543040
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G15720.11e-11TRF-like 5