PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID BGIOSGA022450-PA
Common NameOsI_21979
Organism
Oryza sativa subsp. indica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family HB-other
Protein Properties Length: 438aa    MW: 47777.7 Da    PI: 6.4499
Description HB-other family protein
Gene Model
Gene Model ID Type Source Coding Sequence
BGIOSGA022450-PAgenomeRISView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox62.18.1e-2057111357
                       --SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHHC CS
          Homeobox   3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakekk 57 
                       kR   t++qle+Le+ + +++yp++++r+eL+ klgLt+rq ++WF+ rR k++k
  BGIOSGA022450-PA  57 KRVMKTPYQLEVLERTYTEDPYPNETMRAELSVKLGLTDRQLQMWFCHRRLKDRK 111
                       8999*************************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466893.68E-1839111IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.601.9E-1849111IPR009057Homeodomain-like
PROSITE profilePS5007116.64952112IPR001356Homeobox domain
SMARTSM003892.6E-1754116IPR001356Homeobox domain
CDDcd000863.69E-1655112No hitNo description
PfamPF000461.6E-1757111IPR001356Homeobox domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 438 aa     Download sequence    Send to blast
MDSSGDGGDE GAGAAPAGVE EESPAPASPP APASASAPVP AAVGGGAGAS GSSGKVKRVM  60
KTPYQLEVLE RTYTEDPYPN ETMRAELSVK LGLTDRQLQM WFCHRRLKDR KPPPKRQQLE  120
EEVPVPVMAP PPVLPPPLPH SELTMGTGGM YGEPLLPPSS RRGTGRPSAV PRISASEVAR  180
RYYEPPQVML PPLAPMQLTR AEHRVIDSVE RLIGEPLRED GPVLGVEFDP LPPGAFGAPI  240
VPEQQRQPFR SYEAKMFSGH DTKHIKASAF LPSIDPFVPS TVSGKRKSMT GSSSHLGSRA  300
VREYQFIPEQ SSDIYERTTQ SRYYDVLTEA SDSRMSTGSR FLHGVEKAPG YTFHGQISGS  360
SHLSLHGRPP VFSSGSTDYE MDPSNINSSS VPNESQYGIP QVAGFENSVA PSDRMVYHDD  420
DAFRMERKRK VWFFTDFM
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Os.146379e-97callus| flower| leaf| panicle| seed| stem
Expression -- Microarray ? help Back to Top
Source ID E-value
GEO329813259e-97
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1133330.0AC113333.2 Oryza sativa Japonica Group cultivar Nipponbare chromosome 5 clone OJ1115_B06, complete sequence.
GenBankAP0149610.0AP014961.1 Oryza sativa Japonica Group DNA, chromosome 5, cultivar: Nipponbare, complete sequence.
GenBankCP0126140.0CP012614.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 6 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015639400.10.0homeobox-DDT domain protein RLT2 isoform X1
RefseqXP_015639401.10.0homeobox-DDT domain protein RLT2 isoform X2
TrEMBLA2YA650.0A2YA65_ORYSI; Uncharacterized protein
STRINGOMERI02G34850.10.0(Oryza meridionalis)
STRINGONIVA05G27640.10.0(Oryza nivara)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP22833352
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G44180.18e-37Homeodomain-like transcriptional regulator