PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

BGIOSGA022464-PA

Organism

Oryza sativa subsp. indica

Taxonomic ID

39946

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa

Family

Protein Properties

Length: 230aa MW: 26754.2 Da PI: 9.7822

Description

B3 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
BGIOSGA022464-PA	genome	RIS	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	53.8	3.4e-17	132	222	1	99
EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..E CS B3 1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelv 93 f+k +++s+v+ +l+lp +f +++ + +++ t++l de+ +++ + ++++ l++GW++F a++L +gD +vF+l++r++f + BGIOSGA022464-PA 132 FVKPMLQSHVTGGFWLSLPTHFSRKYL-P-KRDETIRLVDEEDDEFDTLY--LANKRG--LSGGWRGFSIAHKLVDGDCLVFQLIQRTKF--K 216 89**********************5.3.35669***********..555555..9**********************99999..9 PP EEEE-S CS B3 94 vkvfrk 99 v ++r+ BGIOSGA022464-PA 217 VYIIRA 222 999886 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101936	3.92E-24	125	223	IPR015300	DNA-binding pseudobarrel domain
Gene3D	G3DSA:2.40.330.10	4.1E-20	126	223	IPR015300	DNA-binding pseudobarrel domain
CDD	cd10017	7.49E-27	130	221	No hit	No description
Pfam	PF02362	1.5E-15	132	222	IPR003340	B3 DNA binding domain
SMART	SM01019	2.3E-19	132	223	IPR003340	B3 DNA binding domain
PROSITE profile	PS50863	11.899	132	223	IPR003340	B3 DNA binding domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 230 aa Download sequence Send to blast
MAEAASYEEQ RRRQVEANKR KLEELRLHHL SAAVRESAAK PSPVKQRKRK ARALPGAGED 60 APLRRSGRVA NLPEKPKYRD EFQDFEKRIR RSYGGKRRDL SNRVYATDEQ RDYAINAAQE 120 LEEELGSDYP IFVKPMLQSH VTGGFWLSLP THFSRKYLPK RDETIRLVDE EDDEFDTLYL 180 ANKRGLSGGW RGFSIAHKLV DGDCLVFQLI QRTKFKVYII RASSYYETDD

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Os.49655	0.0	callus\| panicle\| stem

Expression -- Microarray ? help Back to Top
Source	ID	E-value
GEO	32988189	0.0

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK102980	0.0	AK102980.1 Oryza sativa Japonica Group cDNA clone:J033115O10, full insert sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015642147.1	1e-169	B3 domain-containing protein Os06g0194400
Swissprot	Q69V36	1e-170	Y6944_ORYSJ; B3 domain-containing protein Os06g0194400
TrEMBL	A0A0E0HM37	1e-168	A0A0E0HM37_ORYNI; Uncharacterized protein
TrEMBL	A0A0E0PUL9	1e-168	A0A0E0PUL9_ORYRU; Uncharacterized protein
STRING	ORUFI06G06290.1	1e-169	(Oryza rufipogon)
STRING	ONIVA06G07020.1	1e-169	(Oryza nivara)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP1756	38	103

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G42700.1	4e-63	B3 family protein

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764]