PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID BGIOSGA022508-PA
Common NameOsI_22084
Organism
Oryza sativa subsp. indica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family MYB_related
Protein Properties Length: 247aa    MW: 26080.9 Da    PI: 5.7792
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
BGIOSGA022508-PAgenomeRISView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding50.83.7e-161461148
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
   Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                      rg+WT  Ed+ l+ ++k +G g W+ ++++ g++R++k+c++rw++yl
  BGIOSGA022508-PA 14 RGAWTSKEDDVLASYIKSHGEGKWREVPQRAGLRRCGKSCRLRWLNYL 61
                      89********************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.601.3E-22663IPR009057Homeodomain-like
PROSITE profilePS5129422.594965IPR017930Myb domain
SMARTSM007171.6E-111363IPR001005SANT/Myb domain
PfamPF002491.2E-141461IPR001005SANT/Myb domain
SuperFamilySSF466899.93E-201588IPR009057Homeodomain-like
CDDcd001671.07E-81661No hitNo description
Gene3DG3DSA:1.10.10.602.4E-56487IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006633Biological Processfatty acid biosynthetic process
GO:0006970Biological Processresponse to osmotic stress
GO:0010023Biological Processproanthocyanidin biosynthetic process
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 247 aa     Download sequence    Send to blast
MGRRACCAKE GMKRGAWTSK EDDVLASYIK SHGEGKWREV PQRAGLRRCG KSCRLRWLNY  60
LRPNIKRGNI DDDEEELIVR LHTLLGNSRK IGTAATAAAG SRGGSTPDTA RATDAASSSS  120
VVPPGQQQQP ASRADTDTAT AAAAAAATTT TVWAPKAVRC TRGFFFHDRE TAPLAAAAPA  180
PAGELGDGDD VDCDYYCSGS SSAATTTSSS SLPAVVEPCF SAGDDWMDDV RALASFLDTD  240
DAWNLCA
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Os.813670.0stem
Expression -- Microarray ? help Back to Top
Source ID E-value
GEO41382980.0
Functional Description ? help Back to Top
Source Description
UniProtControls the expression of genes involved in anthocyanin biosynthesis. Regulates the expression of at least 3 structural genes: chalcone synthase, dihydroflavonol reductase and flavonol O(3) glucosyltransferase. C1 acts as a trans-acting factor.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB1118690.0AB111869.1 Oryza sativa C gene for Myb protein, complete cds, haplotype:SA3.
GenBankAB1118710.0AB111871.1 Oryza sativa Japonica Group C gene for Myb protein, complete cds, haplotype:SA5.
GenBankAB1118720.0AB111872.1 Oryza sativa Indica Group C gene for Myb protein, complete cds, haplotype:SA6.
GenBankAB1118740.0AB111874.1 Oryza sativa Indica Group C gene for Myb protein, complete cds, haplotype:SA8.
GenBankAB1118750.0AB111875.1 Oryza sativa Indica Group C gene for Myb protein, complete cds, haplotype:SA9.
GenBankAP0056520.0AP005652.3 Oryza sativa Japonica Group genomic DNA, chromosome 6, BAC clone:OSJNBb0015B15.
GenBankAP0149620.0AP014962.1 Oryza sativa Japonica Group DNA, chromosome 6, cultivar: Nipponbare, complete sequence.
GenBankCP0126140.0CP012614.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 6 sequence.
GenBankHQ3797030.0HQ379703.1 Oryza sativa Japonica Group isolate Z418-A C1 protein (C1) mRNA, complete cds.
GenBankHQ3797050.0HQ379705.1 Oryza sativa Japonica Group isolate Z418 C1 protein (C1) gene, complete cds.
GenBankKJ9348380.0KJ934838.1 Oryza sativa cultivar Local Basmati Myb protein (C) gene, complete cds.
GenBankKJ9348390.0KJ934839.1 Oryza sativa cultivar Arfa Myb protein (C) gene, complete cds.
GenBankKJ9348400.0KJ934840.1 Oryza sativa cultivar Mulahail Myb protein (C) gene, complete cds.
GenBankKJ9348410.0KJ934841.1 Oryza sativa cultivar Guaroi Myb protein (C) gene, complete cds.
GenBankKJ9348420.0KJ934842.1 Oryza sativa cultivar Harinarayan Myb protein (C) gene, complete cds.
GenBankKJ9348430.0KJ934843.1 Oryza sativa cultivar Ranjit Myb protein (C) gene, complete cds.
GenBankKJ9348440.0KJ934844.1 Oryza sativa cultivar IR8 Myb protein (C) gene, complete cds.
GenBankKJ9348450.0KJ934845.1 Oryza sativa cultivar Bahadur Myb protein (C) gene, complete cds.
GenBankKJ9348470.0KJ934847.1 Oryza sativa cultivar Joya Myb protein (C) gene, complete cds.
GenBankY152190.0Y15219.1 Oryza sativa mRNA for transcriptional activator.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015642631.11e-132anthocyanin regulatory C1 protein
SwissprotP102904e-64MYBC_MAIZE; Anthocyanin regulatory C1 protein
TrEMBLA2YAG91e-178A2YAG9_ORYSI; Uncharacterized protein
STRINGORGLA06G0059500.11e-131(Oryza glaberrima)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP11637448
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G16720.12e-39myb domain protein 7
Publications ? help Back to Top
  1. Chen B,Wang X,Hu Y,Wang Y,Lin Z
    Ectopic expression of a c1-I allele from maize inhibits pigment formation in the flower of transgenic tobacco.
    Mol. Biotechnol., 2004. 26(3): p. 187-92
    [PMID:15004287]
  2. Paz-Ares J,Ghosal D,Saedler H
    Molecular analysis of the C1-I allele from Zea mays: a dominant mutant of the regulatory C1 locus.
    EMBO J., 1990. 9(2): p. 315-21
    [PMID:2303027]
  3. Cone KC,Burr FA,Burr B
    Molecular analysis of the maize anthocyanin regulatory locus C1.
    Proc. Natl. Acad. Sci. U.S.A., 1986. 83(24): p. 9631-5
    [PMID:3025847]
  4. Paz-Ares J,Ghosal D,Wienand U,Peterson PA,Saedler H
    The regulatory c1 locus of Zea mays encodes a protein with homology to myb proto-oncogene products and with structural similarities to transcriptional activators.
    EMBO J., 1987. 6(12): p. 3553-8
    [PMID:3428265]
  5. Scheffler B, et al.
    Molecular analysis of C1 alleles in Zea mays defines regions involved in the expression of this regulatory gene.
    Mol. Gen. Genet., 1994. 242(1): p. 40-8
    [PMID:7904044]
  6. Franken P,Schrell S,Peterson PA,Saedler H,Wienand U
    Molecular analysis of protein domain function encoded by the myb-homologous maize genes C1, Zm 1 and Zm 38.
    Plant J., 1994. 6(1): p. 21-30
    [PMID:7920701]
  7. Singer T,Gierl A,Peterson PA
    Three new dominant C1 suppressor alleles in Zea mays.
    Genet. Res., 1998. 71(2): p. 127-32
    [PMID:9717435]