PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID BGIOSGA022533-PA
Common NameOsI_22119
Organism
Oryza sativa subsp. indica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family bHLH
Protein Properties Length: 201aa    MW: 21238.2 Da    PI: 10.3849
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
BGIOSGA022533-PAgenomeRISView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH24.54.9e-08130170954
                       HHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHH CS
               HLH   9 ErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksL 54 
                        r RR+r+ +++  L++l+P  a      +l+ a++Le+A++Y+k L
  BGIOSGA022533-PA 130 ARLRRERVSQRMRALQRLVPGgA------RLDTASMLEEAIRYVKFL 170
                       699*****************966......9***************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088814.659121170IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.10E-8124175No hitNo description
Gene3DG3DSA:4.10.280.104.6E-11125185IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474596.8E-13126187IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003533.7E-11127176IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000102.9E-5131170IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 201 aa     Download sequence    Send to blast
MEFDMAMDMM SQEQLMHIIS QLDSALASSP SPSTSPSASP PRQSPAAQVP VLPAGDLLNA  60
AAVSTSRAQP APPALHPVAA MAAVQSSSRG IMYTTTRQGV IDAAEEEEAA APRPRRRNAR  120
VSSEPQSVAA RLRRERVSQR MRALQRLVPG GARLDTASML EEAIRYVKFL KGHVQSLERA  180
AAALHMHGGH AAAAGFAGDA V
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1130135RLRRER
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCP0126140.0CP012614.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 6 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025882279.12e-81transcription factor HEC2
TrEMBLA2YAK21e-138A2YAK2_ORYSI; Uncharacterized protein
STRINGORGLA06G0065500.11e-136(Oryza glaberrima)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP161101111
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G00120.17e-21bHLH family protein