PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID BGIOSGA022621-PA
Common NameOsI_22363
Organism
Oryza sativa subsp. indica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family FAR1
Protein Properties Length: 829aa    MW: 94795.4 Da    PI: 6.7304
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
BGIOSGA022621-PAgenomeRISView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR139.91.4e-12168239272
              FAR1   2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk.tekerrtraetrtgCkaklkvkkek 72 
                        Yn+YAk+vGFs+++++s+ks ++ge  k  fvC+k g +e++ +    k+r+++ + +   ka+++vk++ 
  BGIOSGA022621-PA 168 HYNRYAKRVGFSIKINTSRKSAKDGERDKVMFVCNKCGPEEKTGEVcPPKKRKRSRTRQAAWKARMTVKRKG 239
                       6**************************************99999884444455555556778*******986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031014.0E-10168239IPR004330FAR1 DNA binding domain
PfamPF105512.2E-32353447IPR018289MULE transposase domain
PROSITE profilePS509668.716635671IPR007527Zinc finger, SWIM-type
PfamPF044345.6E-5645668IPR007527Zinc finger, SWIM-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 829 aa     Download sequence    Send to blast
MDFDLNSIPE LVSGENEPPV HHLLVDDKDK SETYFPINPT DTSMEIPAIN LDDTFDFETM  60
YTAGDAGSLQ AHNVANDEMQ VFEANDEMQI FEGDYEMQVF EEMSDRGDTM HTSVATGATT  120
ATANTISSED SRTDDSEAQS APSQDIPCST QVPYLTLTFN SEEEARAHYN RYAKRVGFSI  180
KINTSRKSAK DGERDKVMFV CNKCGPEEKT GEVCPPKKRK RSRTRQAAWK ARMTVKRKGA  240
RSHRAIPKEE KDFITMLHGV NLSAGRIMQL MSELYGGARN VPYTRKDISN FKSKLGSEYR  300
CRDIPETIAH FEEIKKDDPN FFYKIQLDKE DRVQNIFWVD GAARNAYKDF KDCISFDCTY  360
MTNMYNMPCA PFIGLNKHGQ SIQLGCGFLR NEKTETFVWL FQAFLEAMEG VEPTNIITDQ  420
DLAMKAAIAL VFPHAKHRNC HWHIMQNAQK KIGHILDHDK ALCDAFNDCL DNSWTEQEFD  480
AKWDAMLTTY HLQDNEHFRH LWEMRQCWVP VYFMHCFFPF LQTTARSEGF NAVLKRYVNP  540
QNSIYNFFLQ YKKIQEKITV ATDQNEFEAE ETIPSMWGNY PMETKALEVY TRPIFNRFQK  600
ELIASTSYKL TRTSENMYLV EPNGGPVRNY GSRAFIVAAN VLDRTYNCEC CKFERDGILC  660
CHVLKVMTSD FVGQVSDIPE HYILPRWTMV KEPELPPVTS IGEQMQLPPE SLKLIRYTNL  720
CTKFTQIAKD ASSNEKAYRM ALQRMSSMTD DLAAMKQSRK KQKKAQPAPA DPARGISDIP  780
SASTNPTLQI NDPPIIQKQG RPVSTRRKPG VHAKASKTSV RKGLASTEK
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1216221KKRKRS
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0040270.0AP004027.3 Oryza sativa Japonica Group genomic DNA, chromosome 6, BAC clone:OJ1136_C11.
GenBankAP0149620.0AP014962.1 Oryza sativa Japonica Group DNA, chromosome 6, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLB8B4I10.0B8B4I1_ORYSI; Uncharacterized protein
STRINGOPUNC09G00260.10.0(Oryza punctata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP1832967
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38180.11e-102FAR1-related sequence 5