PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID BGIOSGA022652-PA
Common NameOsI_22428
Organism
Oryza sativa subsp. indica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family MYB_related
Protein Properties Length: 153aa    MW: 16927.3 Da    PI: 11.9939
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
BGIOSGA022652-PAgenomeRISView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding24.85.1e-0880123345
                       SS-HHHHHHHHHHHHHTTTT..-HHHHHHHHTTTS-HHHHHHHHH CS
   Myb_DNA-binding   3 rWTteEdellvdavkqlGgg..tWktIartmgkgRtlkqcksrwq 45 
                       ++T+ +d+ l ++v + Ggg  +Wk I+r +  gR+  ++k rw 
  BGIOSGA022652-PA  80 PFTAADDDELTRLVLRPGGGgdRWKDISRAVH-GRSSRSVKRRWM 123
                       79******************************.***********7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466898.58E-1068125IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.608.3E-872124IPR009057Homeodomain-like
SMARTSM007170.007377128IPR001005SANT/Myb domain
PROSITE profilePS500907.06280126IPR017877Myb-like domain
CDDcd001679.05E-680125No hitNo description
PfamPF002498.2E-680123IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 153 aa     Download sequence    Send to blast
MCFRRHSVVR AAEREVLRRP AHQAPAGVDA RGGRRPGAPR RGERLPPLAP RGGADAAQAL  60
ASAVPRQVED HLARDVFHRP FTAADDDELT RLVLRPGGGG DRWKDISRAV HGRSSRSVKR  120
RWMEIGTSDE LLRKLWHPRS SMLSPATVVD AVL
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0055270.0AP005527.3 Oryza sativa Japonica Group genomic DNA, chromosome 6, PAC clone:P0603C10.
GenBankAP0149620.0AP014962.1 Oryza sativa Japonica Group DNA, chromosome 6, cultivar: Nipponbare, complete sequence.
GenBankCP0126140.0CP012614.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 6 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015642266.12e-38transcription factor MYB44
TrEMBLB8B0B31e-102B8B0B3_ORYSI; Uncharacterized protein
TrEMBLB9FSL51e-102B9FSL5_ORYSJ; Uncharacterized protein
STRINGOBART06G09910.11e-58(Oryza barthii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP83601346