PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

BGIOSGA022653-PA

Common Name

OsI_22429

Organism

Oryza sativa subsp. indica

Taxonomic ID

39946

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa

Family

MYB_related

Protein Properties

Length: 142aa MW: 16395.7 Da PI: 11.8134

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
BGIOSGA022653-PA	genome	RIS	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	46.5	8.3e-15	37	85	3	48
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHT...TTS-HHHHHHHHHHHT CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmg...kgRtlkqcksrwqkyl 48 +WT+e+d l ++ ++G+++W+++a+ m+ +R++ qc++rw+++l BGIOSGA022653-PA 37 AWTPELDAVLERLAMEHGSRHWRRVAAQMPrhsSRRSPAQCRDRWRDHL 85 7*********************************************986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	16.738	30	89	IPR017930	Myb domain
SMART	SM00717	1.9E-8	34	87	IPR001005	SANT/Myb domain
Pfam	PF00249	5.9E-14	37	85	IPR001005	SANT/Myb domain
Gene3D	G3DSA:1.10.10.60	3.1E-16	37	102	IPR009057	Homeodomain-like
CDD	cd00167	1.14E-8	37	85	No hit	No description
SuperFamily	SSF46689	7.7E-17	37	110	IPR009057	Homeodomain-like
SMART	SM00717	50	90	128	IPR001005	SANT/Myb domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 142 aa Download sequence Send to blast
MDMELSSSSS AASVFASSSA TSPPLGRCVV RIRLPPAWTP ELDAVLERLA MEHGSRHWRR 60 VAAQMPRHSS RRSPAQCRDR WRDHLARDVF HRPFTADDDA ELARLCLRLD DGRSSRAVKR 120 RWRELRKSDA FLGKLWRRPL SH

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
3osf_A	8e-13	29	122	1	103	MYB21
3osf_D	8e-13	29	122	1	103	MYB21
3osg_A	8e-13	29	122	1	103	MYB21
3osg_D	8e-13	29	122	1	103	MYB21
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Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	115	120	RAVKRR

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	CP012614	0.0	CP012614.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 6 sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015642267.1	1e-94	transcription factor MYB44
TrEMBL	A2YBF2	4e-94	A2YBF2_ORYSI; Uncharacterized protein
STRING	ORUFI06G10320.1	5e-94	(Oryza rufipogon)
STRING	OS06T0258500-00	4e-94	(Oryza sativa)
STRING	ORGLA06G0093700.1	4e-94	(Oryza glaberrima)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP8360	13	46

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G67300.1	1e-14	myb domain protein r1