PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID BGIOSGA022694-PA
Common NameOsI_22533
Organism
Oryza sativa subsp. indica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family FAR1
Protein Properties Length: 640aa    MW: 73498.5 Da    PI: 8.3813
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
BGIOSGA022694-PAgenomeRISView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR170.93e-2235124190
              FAR1   1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkek.dgkwevtkleleHnHela 90 
                       kf+ +Y+ ++GF+vrk++++ks  +g + +++fvCs  g+r ++k++   ++++raetrtgC+ ++ +++++ +g++e+++l++eHnH l+
  BGIOSGA022694-PA  35 KFWVSYGGKIGFDVRKQYNNKSAADGLFNSSRFVCSSAGHRGKDKRD-YLTKNPRAETRTGCNVRMGITLNRvEGNYELYDLVTEHNHILQ 124
                       69******************************************999.99**************************************985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031014.6E-1635123IPR004330FAR1 DNA binding domain
PfamPF105511.1E-19208280IPR018289MULE transposase domain
PROSITE profilePS509668.172411447IPR007527Zinc finger, SWIM-type
SMARTSM005750.0092422449IPR006564Zinc finger, PMZ-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 640 aa     Download sequence    Send to blast
MEEIMINQNA EKMDSTPCWM PRTGMKFSSV DEAWKFWVSY GGKIGFDVRK QYNNKSAADG  60
LFNSSRFVCS SAGHRGKDKR DYLTKNPRAE TRTGCNVRMG ITLNRVEGNY ELYDLVTEHN  120
HILQLPETCH LMPSQRKISH VQAFEIDMAD DSGIRPKATY ELASREAGGS SNLGYTRLDH  180
KNYLRTKGVF GTKGFQPFSI VFRAYVFETA KRETVIFGGA LLYDETFESF KWLFETFLAA  240
HNQKHPKTIY TDQDMAMKKA IAAVFPGTWH GLCTFHIMQN AVKHLPHTKS DGPNIFGEFS  300
ACMFEYEDEI TFEKAFSALR SKVHNDSWAV QGKRDKELGS EYESRKKMPR IKMKTPMLLQ  360
VSQLYTPCIF EAFQSEYERS MAAYARATNK TNEYIVGIGA LDGKSTVEEE YLVVSDPSDQ  420
MVSYTCRQFE RCGIMCSHAL KVLDMMNIKL LPDQYILKRW TREARCGTVQ DIHGRNVLEN  480
LKIDAKQRYQ FLCRKFLALA SRAADFEESY LLIDGVLNSL NKQVEDKIKE QTPFTVQSPE  540
EQTPSTVPEK YSHVTSLKKK EVRKRGSKRT PSWVDKFHKK KSTTQKKEED ILTQVSQFQG  600
EEQISSTKDE QVFEEFDFFT SYTELLMNNS SAGNLFGGKQ
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCP0126140.0CP012614.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 6 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015619119.10.0protein FAR1-RELATED SEQUENCE 5-like
TrEMBLB8B0L30.0B8B0L3_ORYSI; Uncharacterized protein
STRINGSb09g006170.10.0(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP1832967
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38180.13e-45FAR1-related sequence 5