PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

BGIOSGA022779-PA

Common Name

OsI_22709

Organism

Oryza sativa subsp. indica

Taxonomic ID

39946

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa

Family

FAR1

Protein Properties

Length: 240aa MW: 27364.3 Da PI: 10.7318

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
BGIOSGA022779-PA	genome	RIS	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	55.3	2.3e-17	95	181	6	90
FAR1 6 YAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk.tekerrtraetrtgCkaklkvkkek.dgkwevtkleleHnHela 90 +Ak+ GFsvrk++ +++ ++++ +r+f+Cs++g+ ++ ++++r++ra tr++ +a+++vk +k +g w v + + +H+H+la BGIOSGA022779-PA 95 FAKDKGFSVRKNNARRNPVTTQVFQRQFTCSRQGYMRDIYVGnSNRSREPRALTRCSSTAQFEVKHDKeKGDWFVLRYVRKHSHPLA 181 89******************************998865543789999*************999**************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	8.4E-16	95	181	IPR004330	FAR1 DNA binding domain

Sequence ? help Back to Top
Protein Sequence Length: 240 aa Download sequence Send to blast
MRSWPAREPK IGRRTHGLPA QNPRSPSDLG SAEVRDGSLP SPLFPPSPLP VSLAITITFI 60 HFVMLQDRHR YIMGDEMGDN LGASRSRGVC NVDCFAKDKG FSVRKNNARR NPVTTQVFQR 120 QFTCSRQGYM RDIYVGNSNR SREPRALTRC SSTAQFEVKH DKEKGDWFVL RYVRKHSHPL 180 AKADEVHFLR LHRKISNAVK ANVMDLKEVG LRQHLVMDVM ERQHGGFEST GFVSRGLYNC

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	CP012614	0.0	CP012614.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 6 sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
TrEMBL	A2YC78	1e-180	A2YC78_ORYSI; Uncharacterized protein
STRING	OB12G10090.1	9e-58	(Oryza brachyantha)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP2449	9	76

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G38180.1	1e-16	FAR1-related sequence 5