PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

BGIOSGA022910-PA

Common Name

OsI_22968

Organism

Oryza sativa subsp. indica

Taxonomic ID

39946

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa

Family

FAR1

Protein Properties

Length: 164aa MW: 19563.2 Da PI: 9.7437

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
BGIOSGA022910-PA	genome	RIS	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	44.5	5.2e-14	18	84	2	76
FAR1 2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkw 76 fYn+YA++vGF+vrks+s+ +r+ +C++egk++ + ++ +k++r+r + r+gC+a ++ + + w BGIOSGA022910-PA 18 FYNKYAEHVGFDVRKSRSRAA-------CREICCNREGKNKYRGDE-TKRERRRRSARIGCRAYVRAVPNVKTAW 84 **************98877.......99**********99.88899999******998776666666 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	1.5E-9	18	85	IPR004330	FAR1 DNA binding domain

Sequence ? help Back to Top
Protein Sequence Length: 164 aa Download sequence Send to blast
MVPKFGMEFK SYEMAYAFYN KYAEHVGFDV RKSRSRAACR EICCNREGKN KYRGDETKRE 60 RRRRSARIGC RAYVRAVPNV KTAWPFAEQL SRVYTRAVFK VFENTLDESV HFRTEQYGVD 120 QTQWIISHSK RSEKHDWCQR QFKVMADVVN GQFSCECMQW EHTG

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Os.78825	1e-118	panicle

Expression -- Microarray ? help Back to Top
Source	ID	E-value
GEO	115468075	1e-118

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AP003520	1e-144	AP003520.3 Oryza sativa Japonica Group genomic DNA, chromosome 6, PAC clone:P0021H10.
GenBank	AP014962	1e-144	AP014962.1 Oryza sativa Japonica Group DNA, chromosome 6, cultivar: Nipponbare, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
TrEMBL	B8B227	1e-120	B8B227_ORYSI; Uncharacterized protein
STRING	OS06T0475650-00	7e-61	(Oryza sativa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP6497	2	5

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G80010.1	5e-07	FAR1-related sequence 8