PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID BGIOSGA023036-PA
Common NameOsI_23236
Organism
Oryza sativa subsp. indica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family FAR1
Protein Properties Length: 335aa    MW: 38483.9 Da    PI: 8.3224
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
BGIOSGA023036-PAgenomeRISView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR183.63.2e-2659145190
              FAR1   1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 
                       +fYn+YA +vGFs+rk  + ks  ++ i +++fvCs+eg++++++++    +r+ra tr+gC a++++k + +gk+ ++++++ HnHel 
  BGIOSGA023036-PA  59 EFYNRYAGDVGFSIRKFWHDKS-STNVIRTKKFVCSREGFNKRNTSD--ACQRKRADTRVGCMAEMTIKITPTGKYAIASFSNTHNHELI 145
                       6********************9.5555****************9988..9999***********************************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031014.7E-2359145IPR004330FAR1 DNA binding domain
PROSITE profilePS5096610.361277313IPR007527Zinc finger, SWIM-type
PfamPF044341.1E-7285311IPR007527Zinc finger, SWIM-type
SMARTSM005751.4E-8288315IPR006564Zinc finger, PMZ-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 335 aa     Download sequence    Send to blast
MGVSVVMRLL LVLRLDLAPF DHEKEDVGDT NISSTDNACV QKLEPVIGME FDNEDIAYEF  60
YNRYAGDVGF SIRKFWHDKS STNVIRTKKF VCSREGFNKR NTSDACQRKR ADTRVGCMAE  120
MTIKITPTGK YAIASFSNTH NHELITPSKA HLLRSQRRMT EAQKAQIDIL NDSGVRPKEG  180
HEVMSRQADF FKHFERAVDD RRHAELQSDF YASQTSPRMP KVHMLIQASK AYTPAIFEIF  240
REEYDMVMGC CLYNNDHTLS TSEYKVIDSA KHGEHGFLVK FDPNEIKVSC SCKKFEFVGI  300
LCRHALKVLD HNNIKELPSE YILKRWTKYA KIGSS
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCP0126140.0CP012614.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 6 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025880978.11e-115protein FAR1-RELATED SEQUENCE 5-like
TrEMBLA2YDQ00.0A2YDQ0_ORYSI; Uncharacterized protein
STRINGOS01T0852650-001e-115(Oryza sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP1832967
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38180.12e-26FAR1-related sequence 5