PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

BGIOSGA023319-PA

Common Name

OsI_23816

Organism

Oryza sativa subsp. indica

Taxonomic ID

39946

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa

Family

ERF

Protein Properties

Length: 943aa MW: 93277.2 Da PI: 6.444

Description

ERF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
BGIOSGA023319-PA	genome	RIS	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	AP2	32.8	1.7e-10	121	172	1	56
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkklege 56 ++y+GVr + r+vAeI+ p+ r +lg+f+tae+ a a++aa++ l+ge BGIOSGA023319-PA 121 TKYRGVRVRF-GTRYVAEIHNPT----GaGRLWLGTFDTAEQGAWAYDAAARVLRGE 172 69******.8*****95....258**********************997 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF00847	1.0E-4	121	172	IPR001471	AP2/ERF domain
CDD	cd00018	1.14E-18	121	178	No hit	No description
SuperFamily	SSF54171	9.81E-15	122	179	IPR016177	DNA-binding domain
Gene3D	G3DSA:3.30.730.10	5.2E-21	122	179	IPR001471	AP2/ERF domain
PROSITE profile	PS51032	17.701	122	179	IPR001471	AP2/ERF domain
SMART	SM00380	3.4E-18	122	187	IPR001471	AP2/ERF domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 943 aa Download sequence Send to blast
MDPEERVAEA MKGLLVEYSQ QSARLAVQVR GNEYRRAAAA GGGGGFLLSP GERERLRAGS 60 GLELVIVHVM EGDQVVSSSA SAEVLVSPLV EGEVRVVPAV ERRRWRRQAA AEEWEEIDPE 120 TKYRGVRVRF GTRYVAEIHN PTGAGRLWLG TFDTAEQGAW AYDAAARVLR GEAAATNFGD 180 PAQTPSPLSA EMRSMLAFFD RARARRERVV EERGAAAAEA EASEAPAPAP LLLLPAPPPS 240 SDVSPVTVQV AAPPSSSDAA PVPATLLSDA SPVIVQVPAP TSSGSDEAAF VGGRGRGAGA 300 GVGGGRGLGH GGGGGRGRGG KRAPTTAVTV VAPPPPVPTP AAGAAAPTLA PASAAAHAPA 360 LSVEPDALVS PASIAPAYAA PAPAPAPAAL EALAPPPPAA PASLSASGGE RGCVAIANAA 420 VAGRGRGRGS GAKRAPTAVT VGAPPPQART PAAAPAKVFV SAPAPAPSAV ISPVLAASAS 480 AAAAFAPAPA PAAAEVIPPP PPLPAAASTA AAPAAERKRK LLTASSLSSS GGERGRGRAR 540 GRGRVADAAI AGGSRGRGRG CGLTPAVVTV GAPPPPSAAP APAPASALSL EPNDIIAPVM 600 SSTLAPGAST AAAAAPAVAP PVAAPEAILI PMPPPAAAVA AAAPVPKKRK LLTASTLSGS 660 GGPGRGRGRV AEATFAGRGR GVWSGRGRGR GRIPTEVTVG TPSPPAPTPA PASATAPLIQ 720 SNVVISPVPP TLAASGVAAW PPVPAIPELT TAAAAPLPKK PVLTAHDVVM ATLFPNGVFS 780 YTAWSSHAPP PPVASGSFFQ EVIPPGGVPT NYAIHEAPDF DPNVFFADVP DGEQDELVLL 840 SWTSTLLDVD NSLTLVADDA ASSAQAAVDV ASSSAQAAID VPSSSVLAVI DIPSSSAQAA 900 IDVPASSAQA ATDVASSSTQ GAAGNERPIM FDFDLNEPAS NFE

Sequence ? help Back to Top

Protein Sequence Length: 943 aa Download sequence Send to blast

MDPEERVAEA MKGLLVEYSQ QSARLAVQVR GNEYRRAAAA GGGGGFLLSP GERERLRAGS  60
GLELVIVHVM EGDQVVSSSA SAEVLVSPLV EGEVRVVPAV ERRRWRRQAA AEEWEEIDPE  120
TKYRGVRVRF GTRYVAEIHN PTGAGRLWLG TFDTAEQGAW AYDAAARVLR GEAAATNFGD  180
PAQTPSPLSA EMRSMLAFFD RARARRERVV EERGAAAAEA EASEAPAPAP LLLLPAPPPS  240
SDVSPVTVQV AAPPSSSDAA PVPATLLSDA SPVIVQVPAP TSSGSDEAAF VGGRGRGAGA  300
GVGGGRGLGH GGGGGRGRGG KRAPTTAVTV VAPPPPVPTP AAGAAAPTLA PASAAAHAPA  360
LSVEPDALVS PASIAPAYAA PAPAPAPAAL EALAPPPPAA PASLSASGGE RGCVAIANAA  420
VAGRGRGRGS GAKRAPTAVT VGAPPPQART PAAAPAKVFV SAPAPAPSAV ISPVLAASAS  480
AAAAFAPAPA PAAAEVIPPP PPLPAAASTA AAPAAERKRK LLTASSLSSS GGERGRGRAR  540
GRGRVADAAI AGGSRGRGRG CGLTPAVVTV GAPPPPSAAP APAPASALSL EPNDIIAPVM  600
SSTLAPGAST AAAAAPAVAP PVAAPEAILI PMPPPAAAVA AAAPVPKKRK LLTASTLSGS  660
GGPGRGRGRV AEATFAGRGR GVWSGRGRGR GRIPTEVTVG TPSPPAPTPA PASATAPLIQ  720
SNVVISPVPP TLAASGVAAW PPVPAIPELT TAAAAPLPKK PVLTAHDVVM ATLFPNGVFS  780
YTAWSSHAPP PPVASGSFFQ EVIPPGGVPT NYAIHEAPDF DPNVFFADVP DGEQDELVLL  840
SWTSTLLDVD NSLTLVADDA ASSAQAAVDV ASSSAQAAID VPSSSVLAVI DIPSSSAQAA  900
IDVPASSAQA ATDVASSSTQ GAAGNERPIM FDFDLNEPAS NFE

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	533	542	RGRGRARGRG
2	533	543	RGRGRARGRGR

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Os.55188	0.0	panicle

Expression -- Microarray ? help Back to Top
Source	ID	E-value
GEO	32992852	0.0

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	CP012614	0.0	CP012614.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 6 sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_025881953.1	0.0	calphotin
TrEMBL	B8B0G9	0.0	B8B0G9_ORYSI; Uncharacterized protein
STRING	ORUFI06G23640.1	0.0	(Oryza rufipogon)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP13787	9	9

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G12980.1	6e-12	ERF family protein