 |
Plant Transcription
Factor Database
|
Transcription Factor Information
|
Basic
Information? help
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| TF ID |
BGIOSGA023409-PA |
| Common Name | OsI_23979 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
|
| Family |
SBP |
| Protein Properties |
Length: 305aa MW: 31714.3 Da PI: 9.7192 |
| Description |
SBP family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| BGIOSGA023409-PA | genome | RIS | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | SBP | 47.5 | 4.8e-15 | 104 | 134 | 47 | 77 |
SSEEETTT--SS--S-STTTT-------S-- CS
SBP 47 srfhelsefDeekrsCrrrLakhnerrrkkq 77
+fh l+efDe+krsCr+rLa+hn+rrrk++
BGIOSGA023409-PA 104 NQFHVLTEFDEAKRSCRKRLAEHNRRRRKPA 134
58***************************87 PP
|
| Sequence ? help Back to Top |
| Protein Sequence Length: 305 aa
Download sequence Send
to blast |
MAKLQSAVGF GSRCCMPRPR GDQTAAGQTG SRSRHNARFR RGGGSGAASF SELSMFHITC 60
TSSYPQSNIQ ELKNRGVKLD CIAQNPTIIS AALSVLAISS ELSNQFHVLT EFDEAKRSCR 120
KRLAEHNRRR RKPAAAATTA VAAAKDAAAA PVAAGKKLSG GAATSYTGDN KNVVSMSAAK 180
SPISSNTSVI SCLPEQGKHA AAAARPTALT LGGAPPHESS APQIGAMLHH HHHHQQDHMQ 240
VSSLVHINGG GGGGGSNNIL SCSSVCSSAL PSTATNGEVS DQNNDNSHNN GGNNNNMHLF 300
EVDFM
|
| Nucleic Localization
Signal ? help
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 |
| No. |
Start |
End |
Sequence |
| 1 | 115 | 132 | KRSCRKRLAEHNRRRRKP |
| Expression --
Description ? help
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| Source |
Description |
| Uniprot | TISSUE SPECIFICITY: Expressed in stems, leaf sheaths, and young panicles. {ECO:0000269|PubMed:16861571}. |
| Uniprot | TISSUE SPECIFICITY: Expressed in stems, leaf sheaths, and young panicles. {ECO:0000269|PubMed:16861571}. |
| Functional Description ? help
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| Source |
Description |
| UniProt | Trans-acting factor that binds specifically to the consensus nucleotide sequence 5'-TNCGTACAA-3'. {ECO:0000250}. |
| UniProt | Trans-acting factor that binds specifically to the consensus nucleotide sequence 5'-TNCGTACAA-3'. {ECO:0000250}. |
| Annotation --
Nucleotide ? help
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| Source |
Hit ID |
E-value |
Description |
| GenBank | CP012614 | 0.0 | CP012614.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 6 sequence. |
