PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID BGIOSGA023435-PA
Common NameOsI_24042
Organism
Oryza sativa subsp. indica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family MIKC_MADS
Protein Properties Length: 174aa    MW: 20195.2 Da    PI: 6.2857
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
BGIOSGA023435-PAgenomeRISView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF81.84.6e-26959151
                      S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
            SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                      krie+ ++rqvtfskRr+g lKKA+EL vLCda+v v++fs +gkl++++s
  BGIOSGA023435-PA  9 KRIEDATRRQVTFSKRRAGFLKKANELAVLCDAQVGVVVFSDKGKLFDFCS 59
                      79***********************************************96 PP
2K-box53.41.1e-1882158984
             K-box   9 leeakaeslqqelakLkkeienLqreqRhllGedLesLs.lkeLqqLeqqLekslkkiRskKnellleqieelqkke 84 
                        ++++ e++  e+++L++ei++L+ ++R+  GedL+s s + eL qL+ qLe+sl+k+ ++K+el+ +q+e+++++ 
  BGIOSGA023435-PA  82 ETNRDDEQMVMEITRLRNEIDQLEASLRRQTGEDLSSVStVDELSQLQLQLESSLSKVHARKDELMSQQLEDMRRMV 158
                       4556678999***************************984689*******************************975 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006630.726161IPR002100Transcription factor, MADS-box
SMARTSM004321.2E-38160IPR002100Transcription factor, MADS-box
CDDcd002651.52E-36272No hitNo description
SuperFamilySSF554551.27E-28278IPR002100Transcription factor, MADS-box
PRINTSPR004049.5E-27323IPR002100Transcription factor, MADS-box
PfamPF003194.4E-241057IPR002100Transcription factor, MADS-box
PRINTSPR004049.5E-272338IPR002100Transcription factor, MADS-box
PRINTSPR004049.5E-273859IPR002100Transcription factor, MADS-box
PfamPF014861.1E-1784157IPR002487Transcription factor, K-box
PROSITE profilePS5129712.35487174IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 174 aa     Download sequence    Send to blast
MGRGKIEMKR IEDATRRQVT FSKRRAGFLK KANELAVLCD AQVGVVVFSD KGKLFDFCSP  60
PVILMELFHR YEITTRNTRL QETNRDDEQM VMEITRLRNE IDQLEASLRR QTGEDLSSVS  120
TVDELSQLQL QLESSLSKVH ARKDELMSQQ LEDMRRMVHY SLIVVAVVVF ADEW
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6byy_A1e-15159159MEF2 CHIMERA
6byy_B1e-15159159MEF2 CHIMERA
6byy_C1e-15159159MEF2 CHIMERA
6byy_D1e-15159159MEF2 CHIMERA
6bz1_A1e-15159159MEF2 CHIMERA
6bz1_B1e-15159159MEF2 CHIMERA
6bz1_C1e-15159159MEF2 CHIMERA
6bz1_D1e-15159159MEF2 CHIMERA
Search in ModeBase
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Ubiquitous. {ECO:0000269|PubMed:14701936}.
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY1740930.0AY174093.1 Oryza sativa (japonica cultivar-group) MADS30 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025882176.11e-110MADS-box transcription factor 30 isoform X6
SwissprotQ655V41e-110MAD30_ORYSJ; MADS-box transcription factor 30
TrEMBLB8B1601e-124B8B160_ORYSI; Uncharacterized protein
TrEMBLB9FQE11e-122B9FQE1_ORYSJ; Uncharacterized protein
STRINGORUFI06G25880.11e-122(Oryza rufipogon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP185037100
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G23260.29e-38MIKC_MADS family protein