PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

BGIOSGA023566-PA

Common Name

OsI_24382

Organism

Oryza sativa subsp. indica

Taxonomic ID

39946

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa

Family

C3H

Protein Properties

Length: 1267aa MW: 141849 Da PI: 7.6512

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
BGIOSGA023566-PA	genome	RIS	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	29.7	1.1e-09	5	26	3	25
S---SGGGGTS--TTTTT-SS-S CS zf-CCCH 3 telCrffartGtCkyGdrCkFaH 25 +e+Cr+f+r G CkyG++C++ H BGIOSGA023566-PA 5 QEICRNFQR-GSCKYGAQCRYLH 26 79*****.*********** PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00356	1.0E-7	2	28	IPR000571	Zinc finger, CCCH-type
PROSITE profile	PS50103	16.906	2	29	IPR000571	Zinc finger, CCCH-type
SuperFamily	SSF90229	6.12E-5	3	27	IPR000571	Zinc finger, CCCH-type
Pfam	PF00642	4.8E-7	5	26	IPR000571	Zinc finger, CCCH-type
Gene3D	G3DSA:4.10.1000.10	1.3E-6	6	26	IPR000571	Zinc finger, CCCH-type
Pfam	PF03108	1.6E-20	629	694	IPR004332	Transposase, MuDR, plant
Pfam	PF10551	6.2E-17	825	921	IPR018289	MULE transposase domain
Pfam	PF04434	6.7E-6	1072	1097	IPR007527	Zinc finger, SWIM-type
PROSITE profile	PS50966	10.385	1072	1104	IPR007527	Zinc finger, SWIM-type
SMART	SM00575	8.1E-4	1079	1107	IPR006564	Zinc finger, PMZ-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005635	Cellular Component	nuclear envelope
GO:0008270	Molecular Function	zinc ion binding

Sequence ? help Back to Top
Protein Sequence Length: 1267 aa Download sequence Send to blast
MSRRQEICRN FQRGSCKYGA QCRYLHASPH QQQQQQQQQA KPNPFGFGTG SRQQQQPSFG 60 SQFQQQQQQQ QKPNPFGFGV QGANAQSRNA PGPAKPFQNK WVRDPSAPTK QAEAVQPPQA 120 QAAHTSCEDP QSCRQQISED FKNEAPIWKL TCYAHLRNGP CDIKGDISFE ELRAKAYEEG 180 KQGHSLQSIV EGERNLQNAK LMEFTNLLNS ARPSQTPSFP TMSSFPEVKN NSSFGASQTN 240 GPPVFSSFSQ IGAATNIGPG PGTTTPGMPA SSPFGHPSSA PLAAPTFGSS QMKFGVSSVF 300 GNQGSGQPFG SFQAPRFPSS KSPASSVQHR DIDRQSQELL NGMVTPPSVM FEESVGNNKN 360 ENQDDSIWLK EKWAIGELHD DTKELYNKQE NLQDEPTSLA AAGPGDTTSS FAASAVAGDW 420 SGLENFHDLP LNMQAFEIYH LIHVTFEICT EMRISSPYHF GPSEEIGRCK FMSIVAIVHT 480 FYGNLWMRDG VFITEIQDRW QDKIQLDIMD NILVVCKSTL ADDESASEVS SGSDSDSDCI 540 LGDDCPSDDD EEAAQIHKRF KELKDKLKTG KVDKLDDVVF EAGAEQDGND TPSFDSDDEE 600 SVEEVASDEE VSARKLIKYP RFKEKPGVPT FELGMTFSCK KQFKKAITAY GLAERKAINF 660 VKDDPKRVRA RCDWPSCPWV CLLSKNSRTD GWQIATLENS HLCPSRRDNK LVTSSRIAEK 720 YGKFIVANPS WKLAHMKATV QEEMFADVNI SKLKRAKSIT MKKAINAAKW QYQKLYNYQL 780 ELLRSNPGST VVVDREVDMD PPVFKRIYIC LDACKKGFLA GCRKVIGLDG CFFKGAKNGE 840 LLCAIGKDAN NQMYPIAWAV VHKANKEEWH WFCGLLCSDL QVGDGSGWVF ISNQQKEIIN 900 AMDKWAPQAE HRICARHIYA NLKRHFYDNE HQKFWKCAKA PCITLFDLAM AELVQLTTPA 960 VQTILNNHPQ HWSRAWFRSG SNCDLVDNSM CESFNKWILE ARFFPIITML ETIRRKVMVR 1020 IHDQRTISGR WTTSICPNIL KKMNVYITES AFCHATCNGG DSFEVKHHDN RFTVHLDKKE 1080 CSCRYWQLSG LPCPHAISCI FFKTKTNSLD EYIAECYSVK EFKKIYSQCL EPVEGMSSWP 1140 EDDKEPLNAP GYIKMPGETR RESNEPLKAT KLSRIGSIIR CSKCKQIGHN KSTCNKHHGG 1200 GSSTPDSLQV ALVELHAHSQ GSTSATIKVT SGQAFVNVST QESAKFKPKK LTPGLLLLMP 1260 PWESDKL

Sequence ? help Back to Top

Protein Sequence Length: 1267 aa Download sequence Send to blast

MSRRQEICRN FQRGSCKYGA QCRYLHASPH QQQQQQQQQA KPNPFGFGTG SRQQQQPSFG  60
SQFQQQQQQQ QKPNPFGFGV QGANAQSRNA PGPAKPFQNK WVRDPSAPTK QAEAVQPPQA  120
QAAHTSCEDP QSCRQQISED FKNEAPIWKL TCYAHLRNGP CDIKGDISFE ELRAKAYEEG  180
KQGHSLQSIV EGERNLQNAK LMEFTNLLNS ARPSQTPSFP TMSSFPEVKN NSSFGASQTN  240
GPPVFSSFSQ IGAATNIGPG PGTTTPGMPA SSPFGHPSSA PLAAPTFGSS QMKFGVSSVF  300
GNQGSGQPFG SFQAPRFPSS KSPASSVQHR DIDRQSQELL NGMVTPPSVM FEESVGNNKN  360
ENQDDSIWLK EKWAIGELHD DTKELYNKQE NLQDEPTSLA AAGPGDTTSS FAASAVAGDW  420
SGLENFHDLP LNMQAFEIYH LIHVTFEICT EMRISSPYHF GPSEEIGRCK FMSIVAIVHT  480
FYGNLWMRDG VFITEIQDRW QDKIQLDIMD NILVVCKSTL ADDESASEVS SGSDSDSDCI  540
LGDDCPSDDD EEAAQIHKRF KELKDKLKTG KVDKLDDVVF EAGAEQDGND TPSFDSDDEE  600
SVEEVASDEE VSARKLIKYP RFKEKPGVPT FELGMTFSCK KQFKKAITAY GLAERKAINF  660
VKDDPKRVRA RCDWPSCPWV CLLSKNSRTD GWQIATLENS HLCPSRRDNK LVTSSRIAEK  720
YGKFIVANPS WKLAHMKATV QEEMFADVNI SKLKRAKSIT MKKAINAAKW QYQKLYNYQL  780
ELLRSNPGST VVVDREVDMD PPVFKRIYIC LDACKKGFLA GCRKVIGLDG CFFKGAKNGE  840
LLCAIGKDAN NQMYPIAWAV VHKANKEEWH WFCGLLCSDL QVGDGSGWVF ISNQQKEIIN  900
AMDKWAPQAE HRICARHIYA NLKRHFYDNE HQKFWKCAKA PCITLFDLAM AELVQLTTPA  960
VQTILNNHPQ HWSRAWFRSG SNCDLVDNSM CESFNKWILE ARFFPIITML ETIRRKVMVR  1020
IHDQRTISGR WTTSICPNIL KKMNVYITES AFCHATCNGG DSFEVKHHDN RFTVHLDKKE  1080
CSCRYWQLSG LPCPHAISCI FFKTKTNSLD EYIAECYSVK EFKKIYSQCL EPVEGMSSWP  1140
EDDKEPLNAP GYIKMPGETR RESNEPLKAT KLSRIGSIIR CSKCKQIGHN KSTCNKHHGG  1200
GSSTPDSLQV ALVELHAHSQ GSTSATIKVT SGQAFVNVST QESAKFKPKK LTPGLLLLMP  1260
PWESDKL

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Os.8048	0.0	callus\| flower\| leaf\| panicle\| root\| seed\| stem

Expression -- Microarray ? help Back to Top
Source	ID	E-value
GEO	32979501	0.0

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK069477	0.0	AK069477.1 Oryza sativa Japonica Group cDNA clone:J023019I22, full insert sequence.
GenBank	AK100489	0.0	AK100489.1 Oryza sativa Japonica Group cDNA clone:J023098D08, full insert sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015642999.1	0.0	uncharacterized protein LOC4341995
Refseq	XP_015643000.1	0.0	uncharacterized protein LOC4341995
TrEMBL	B8B264	0.0	B8B264_ORYSI; Uncharacterized protein
STRING	OS06T0704400-02	0.0	(Oryza sativa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP9447	28	29

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G75340.1	7e-45	C3H family protein