PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

BGIOSGA023741-PA

Organism

Oryza sativa subsp. indica

Taxonomic ID

39946

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa

Family

ERF

Protein Properties

Length: 299aa MW: 31740.9 Da PI: 6.9067

Description

ERF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
BGIOSGA023741-PA	genome	RIS	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	AP2	56.5	6.8e-18	39	87	3	55
AP2 3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 + GVr+++ +gr++AeIrdp++ + r++lg+f+ta+eAa a+++a+++++g BGIOSGA023741-PA 39 FLGVRRRP-WGRYAAEIRDPTT---KERHWLGTFDTAQEAALAYDRAALSMKG 87 56****.******965...5**********************998 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51032	20.547	38	95	IPR001471	AP2/ERF domain
SMART	SM00380	1.4E-29	38	101	IPR001471	AP2/ERF domain
CDD	cd00018	1.58E-25	38	94	No hit	No description
PRINTS	PR00367	1.0E-7	39	50	IPR001471	AP2/ERF domain
SuperFamily	SSF54171	4.38E-20	39	96	IPR016177	DNA-binding domain
Gene3D	G3DSA:3.30.730.10	4.7E-28	39	95	IPR001471	AP2/ERF domain
Pfam	PF00847	2.5E-11	41	87	IPR001471	AP2/ERF domain
PRINTS	PR00367	1.0E-7	61	77	IPR001471	AP2/ERF domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0010102	Biological Process	lateral root morphogenesis
GO:0010432	Biological Process	bract development
GO:0010451	Biological Process	floral meristem growth
GO:0010582	Biological Process	floral meristem determinacy
GO:0005634	Cellular Component	nucleus
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0044212	Molecular Function	transcription regulatory region DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 299 aa Download sequence Send to blast
MAFSEPPKPA SQPSPPSSPM SERPPSGRSR RRAQEPGRFL GVRRRPWGRY AAEIRDPTTK 60 ERHWLGTFDT AQEAALAYDR AALSMKGAQA RTNFVYTHAA YNYPPFLAPF HAPQYAAAAA 120 APSSVQYGGG VGAAPHIGSY GHHHHHHHHH GHGAASGASS VGECSTMPVM VPVDPHRSSM 180 SSSLLDMDRN GHDFLFSGAD DNSGYLSSVV PESCLRPRGG GAAADHQDMR RYSDADAYGM 240 MGLREDVDDL AQMVAGFWGG GDAADQLGAC GFPASGGAAD MVASSQGSDS YSPFSFLSH

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5wx9_A	3e-18	35	94	11	71	Ethylene-responsive transcription factor ERF096
Search in ModeBase

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Os.32291	0.0	stem

Expression -- Microarray ? help Back to Top
Source	ID	E-value
GEO	32990574	0.0

Expression -- Description ? help Back to Top
Source	Description
Uniprot	DEVELOPMENTAL STAGE: Expressed at the time of rudimentary glumes differentiation in a half-ring domain at the base of the rudimentary glume primordium.

Functional Description ? help Back to Top
Source	Description
UniProt	Required to prevent the formation of axillary meristems within the spikelet meristem and permit the subsequent establishment of floral meristem identity (PubMed:12835399, PubMed:14503923). Mediates the transition from spikelet to floret meristem (PubMed:14503923). Determines the transition from panicle branching to spikelet formation. May specify floral organ identity by regulating the class B genes (Agamous-like genes) MADS6 and MADS17, as well as class E genes MADS1, MADS7 and MADS8 in floral meristem (PubMed:26744119). Possesses transactivation activity (PubMed:12835399). {ECO:0000269\|PubMed:12835399, ECO:0000269\|PubMed:14503923, ECO:0000269\|PubMed:26744119}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00520	DAP	Transfer from AT5G18560	Download

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AB103120	0.0	AB103120.1 Oryza sativa Japonica Group fzp gene for frizzy panicle, complete cds.
GenBank	AK105365	0.0	AK105365.1 Oryza sativa Japonica Group cDNA clone:001-119-F02, full insert sequence.
GenBank	AP004570	0.0	AP004570.5 Oryza sativa Japonica Group genomic DNA, chromosome 7, PAC clone:P0625E02.
GenBank	AP014963	0.0	AP014963.1 Oryza sativa Japonica Group DNA, chromosome 7, cultivar: Nipponbare, complete sequence.
GenBank	CP012615	0.0	CP012615.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 7 sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015646388.1	0.0	ethylene-responsive transcription factor FZP
Swissprot	Q8H3Q1	0.0	FZP_ORYSJ; Ethylene-responsive transcription factor FZP
TrEMBL	A0A0E0I5G5	0.0	A0A0E0I5G5_ORYNI; Uncharacterized protein
TrEMBL	A0A0E0QCI9	0.0	A0A0E0QCI9_ORYRU; Uncharacterized protein
STRING	ORUFI07G26720.1	0.0	(Oryza rufipogon)
STRING	OS07T0669500-01	0.0	(Oryza sativa)
STRING	ONIVA07G25390.1	0.0	(Oryza nivara)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP10525	28	38

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G18560.1	8e-38	ERF family protein

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764] Zhu QH,Hoque MS,Dennis ES,Upadhyaya NM Ds tagging of BRANCHED FLORETLESS 1 (BFL1) that mediates the transition from spikelet to floret meristem in rice (Oryza sativa L). BMC Plant Biol., 2003. 3: p. 6 [PMID:14503923] Liu HQ, et al. [Towards the positional cloning of a spikelet identity gene frizzle panicle (FZP) in rice (Oryza sativa L.)]. Yi Chuan Xue Bao, 2003. 30(9): p. 811-6 [PMID:14577371] Jang S, et al. The OsFOR1 gene encodes a polygalacturonase-inhibiting protein (PGIP) that regulates floral organ number in rice. Plant Mol. Biol., 2003. 53(3): p. 357-69 [PMID:14750524] Rossini L, et al. Candidate genes for barley mutants involved in plant architecture: an in silico approach. Theor. Appl. Genet., 2006. 112(6): p. 1073-85 [PMID:16501940] Yi G, et al. Morphological and molecular characterization of a new frizzy panicle mutant, "fzp-9(t)", in rice (Oryza sativa L.). Hereditas, 2005. 142(2005): p. 92-7 [PMID:16970618] Duan Y, et al. Genetic analysis and mapping of gene fzp(t) controlling spikelet differentiation in rice. Sci. China, C, Life Sci., 2003. 46(3): p. 328-34 [PMID:18763148] Routledge AP, et al. Magnaporthe grisea interactions with the model grass Brachypodium distachyon closely resemble those with rice (Oryza sativa). Mol. Plant Pathol., 2004. 5(4): p. 253-65 [PMID:20565594] Lee DY,An G Two AP2 family genes, supernumerary bract (SNB) and Osindeterminate spikelet 1 (OsIDS1), synergistically control inflorescence architecture and floral meristem establishment in rice. Plant J., 2012. 69(3): p. 445-61 [PMID:22003982] Derbyshire P,Byrne ME MORE SPIKELETS1 is required for spikelet fate in the inflorescence of Brachypodium. Plant Physiol., 2013. 161(3): p. 1291-302 [PMID:23355632] Poursarebani N, et al. The Genetic Basis of Composite Spike Form in Barley and 'Miracle-Wheat'. Genetics, 2015. 201(1): p. 155-65 [PMID:26156223] Bai X, et al. Regulatory role of FZP in the determination of panicle branching and spikelet formation in rice. Sci Rep, 2016. 6: p. 19022 [PMID:26744119] Ma X, et al. Genomic structure analysis of a set of Oryza nivara introgression lines and identification of yield-associated QTLs using whole-genome resequencing. Sci Rep, 2016. 6: p. 27425 [PMID:27251022]