PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID BGIOSGA023903-PA
Common NameOsI_26876
Organism
Oryza sativa subsp. indica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family ERF
Protein Properties Length: 341aa    MW: 37104.6 Da    PI: 4.5305
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
BGIOSGA023903-PAgenomeRISView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP261.22.3e-19109159155
               AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                       ++y+G+r+++ +g+W+AeIrdp++     r++lg+fgtaeeAa a++  +++++g
  BGIOSGA023903-PA 109 TRYRGIRQRP-WGKWAAEIRDPRK---GVRVWLGTFGTAEEAAMAYDVEARRIRG 159
                       68********.**********954...4************************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008472.3E-12109159IPR001471AP2/ERF domain
CDDcd000182.16E-30109168No hitNo description
Gene3DG3DSA:3.30.730.103.9E-31110168IPR001471AP2/ERF domain
SuperFamilySSF541711.18E-21110168IPR016177DNA-binding domain
PROSITE profilePS5103223.749110167IPR001471AP2/ERF domain
SMARTSM003803.9E-35110173IPR001471AP2/ERF domain
PRINTSPR003673.5E-11111122IPR001471AP2/ERF domain
PRINTSPR003673.5E-11133149IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008219Biological Processcell death
GO:0009723Biological Processresponse to ethylene
GO:0009735Biological Processresponse to cytokinin
GO:0009753Biological Processresponse to jasmonic acid
GO:0010286Biological Processheat acclimation
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0051707Biological Processresponse to other organism
GO:0005634Cellular Componentnucleus
GO:0005737Cellular Componentcytoplasm
GO:0005886Cellular Componentplasma membrane
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 341 aa     Download sequence    Send to blast
MCGGSILSDL HLPVRRTVNA GDLWGDAGKG RDGGDGLKKR KGSSWDFDVD CDDDDDDFEA  60
DFEEFEDDYG DDDDVGFGHD DQESDMNGLK LAGFSTTKLG LGGSRKRKTR YRGIRQRPWG  120
KWAAEIRDPR KGVRVWLGTF GTAEEAAMAY DVEARRIRGK KAKVNFPDAA AAAPKRPRRS  180
SAKHSPQQQK ARSSSSSPAS LNASDAVSKS NNNRVSSAGS STDATAAAIA IDDGVKLELL  240
SETDPSPPMA AAAAAWLDAF ELNDLDGSRC KDNAFDHQIH KVEAAVADEF AFYDDPSYMQ  300
LGYQLDQGNS YENIDALFGG EAVNIGGLWS FDDMPMEFRA Y
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A2e-20111167663ATERF1
3gcc_A2e-20111167663ATERF1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1103108SRKRKT
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Os.102930.0callus| flower| leaf| panicle| root| seed| stem
Expression -- Microarray ? help Back to Top
Source ID E-value
GEO428216770.0
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00109PBMTransfer from AT3G16770Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK0610470.0AK061047.1 Oryza sativa Japonica Group cDNA clone:006-205-F01, full insert sequence.
GenBankAK0670600.0AK067060.1 Oryza sativa Japonica Group cDNA clone:J013090P08, full insert sequence.
GenBankAK1093600.0AK109360.2 Oryza sativa Japonica Group cDNA clone:006-206-B03, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015647923.10.0ethylene-responsive transcription factor 1-like
TrEMBLA0A0E0I3P30.0A0A0E0I3P3_ORYNI; Uncharacterized protein
TrEMBLA2YNQ40.0A2YNQ4_ORYSI; Uncharacterized protein
STRINGONIVA07G20780.10.0(Oryza nivara)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP145602123
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G16770.11e-33ethylene-responsive element binding protein