PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID BGIOSGA024272-PA
Common NameOsI_26086
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family FAR1
Protein Properties Length: 574aa    MW: 64020.8 Da    PI: 9.5761
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
BGIOSGA024272-PAgenomeRISView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR169.95.9e-2211107190
              FAR1   1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk.......tekerr....traetrtgCkaklkvkkek.dgkwevtkl 81 
                       +fY++YA ++GF vrks+++k++r++ +t+r fvCsk+g+r+e kk        +    +    + + +rtgC a+l++k+    + ++vt++
  BGIOSGA024272-PA  11 EFYKAYAARLGFVVRKSNKSKNSRHT-VTRRLFVCSKQGFRQEPKKPpqdeaaaA----SppppRCPDSRTGCLASLTIKLLPsANAFRVTDF 98 
                       6*****************99997666.****************999966544433....145548899*************99899******* PP

              FAR1  82 eleHnHela 90 
                         eHnH+la
  BGIOSGA024272-PA  99 AAEHNHPLA 107
                       *******97 PP

2FAR1721.4e-22155254290
              FAR1   2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk.............tekerrtraetrtgCkaklkvkkekdgkwevtkl 81 
                       fYn+YA++vGFsvr+s++k++   g i++r fvCs+eg +++ k++             + + r   + trtgC+a++++k +   +++v+k+
  BGIOSGA024272-PA 155 FYNRYAEHVGFSVRRSYKKRK--RGVIVSRIFVCSREGVSDRAKHEsiaivsnnastgpSGTPRPGPPPTRTGCQARMVIKITPCRTYRVAKF 245
                       9*************9976665..999**************9999999****999998877777778899************************ PP

              FAR1  82 eleHnHela 90 
                       + eHnH+la
  BGIOSGA024272-PA 246 VPEHNHPLA 254
                       *******97 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031014.7E-1911107IPR004330FAR1 DNA binding domain
PfamPF031012.2E-19155254IPR004330FAR1 DNA binding domain
PfamPF044343.8E-6393439IPR007527Zinc finger, SWIM-type
PROSITE profilePS5096610.225393440IPR007527Zinc finger, SWIM-type
SMARTSM005752.0E-6415442IPR006564Zinc finger, PMZ-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 574 aa     Download sequence    Send to blast
MYFETEEDAY EFYKAYAARL GFVVRKSNKS KNSRHTVTRR LFVCSKQGFR QEPKKPPQDE  60
AAAASPPPPR CPDSRTGCLA SLTIKLLPSA NAFRVTDFAA EHNHPLASAA PAVSLALLPP  120
SSSHHTIAAV ASLPDPRDGP RTDMHFETED DAYAFYNRYA EHVGFSVRRS YKKRKRGVIV  180
SRIFVCSREG VSDRAKHESI AIVSNNASTG PSGTPRPGPP PTRTGCQARM VIKITPCRTY  240
RVAKFVPEHN HPLANPDSVH KLRSHKMRAR AHELGAGELH RRKHGKALFS ADILTTLRKD  300
NMINDIKREL SEQEDILQFL RRYETMLEEH RSKKLQADVD GSQVTLPIPS LRMLKQASSA  360
YTPEAFKMFQ GEFEAYMNCM SFPCGGLGTI SEYKITLDEK PSESIVKFDA LDGSATCSCR  420
KFESVGIQCC HVLKVLDLKN IKELPEQYIL RRWRKDARSV RIGEEPSGGS SSMRSASEVR  480
FSTMCRFLSL IASRAARSEE ATSYIESQSS VLLKHLDDIL QTGYPDIGNH VVASSSQPIS  540
FVGNQLPDHT SQARGVPQTT NGINLNISAK IIYY
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Os.439950.0leaf
Expression -- Microarray ? help Back to Top
Source ID E-value
GEO379890100.0
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0039560.0AP003956.5 Oryza sativa Japonica Group genomic DNA, chromosome 7, BAC clone:OJ1457_D07.
GenBankAP0149630.0AP014963.1 Oryza sativa Japonica Group DNA, chromosome 7, cultivar: Nipponbare, complete sequence.
GenBankCP0126150.0CP012615.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 7 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015647573.10.0protein FAR1-RELATED SEQUENCE 5
TrEMBLA2YLI90.0A2YLI9_ORYSI; Uncharacterized protein
STRINGORGLA07G0123500.10.0(Oryza glaberrima)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP1832967
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38180.11e-21FAR1-related sequence 5