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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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| Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
| Basic Information? help Back to Top | |||||||||
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| TF ID | BGIOSGA024272-PA | ||||||||
| Common Name | OsI_26086 | ||||||||
| Organism | |||||||||
| Taxonomic ID | |||||||||
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
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| Family | FAR1 | ||||||||
| Protein Properties | Length: 574aa MW: 64020.8 Da PI: 9.5761 | ||||||||
| Description | FAR1 family protein | ||||||||
| Gene Model |
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| Signature Domain? help Back to Top | |||||||
|---|---|---|---|---|---|---|---|
| No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
| 1 | FAR1 | 69.9 | 5.9e-22 | 11 | 107 | 1 | 90 |
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk.......tekerr....traetrtgCkaklkvkkek.dgkwevtkl 81
+fY++YA ++GF vrks+++k++r++ +t+r fvCsk+g+r+e kk + + + + +rtgC a+l++k+ + ++vt++
BGIOSGA024272-PA 11 EFYKAYAARLGFVVRKSNKSKNSRHT-VTRRLFVCSKQGFRQEPKKPpqdeaaaA----SppppRCPDSRTGCLASLTIKLLPsANAFRVTDF 98
6*****************99997666.****************999966544433....145548899*************99899******* PP
FAR1 82 eleHnHela 90
eHnH+la
BGIOSGA024272-PA 99 AAEHNHPLA 107
*******97 PP
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| 2 | FAR1 | 72 | 1.4e-22 | 155 | 254 | 2 | 90 |
FAR1 2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk.............tekerrtraetrtgCkaklkvkkekdgkwevtkl 81
fYn+YA++vGFsvr+s++k++ g i++r fvCs+eg +++ k++ + + r + trtgC+a++++k + +++v+k+
BGIOSGA024272-PA 155 FYNRYAEHVGFSVRRSYKKRK--RGVIVSRIFVCSREGVSDRAKHEsiaivsnnastgpSGTPRPGPPPTRTGCQARMVIKITPCRTYRVAKF 245
9*************9976665..999**************9999999****999998877777778899************************ PP
FAR1 82 eleHnHela 90
+ eHnH+la
BGIOSGA024272-PA 246 VPEHNHPLA 254
*******97 PP
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| Protein Features ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Database | Entry ID | E-value | Start | End | InterPro ID | Description |
| Pfam | PF03101 | 4.7E-19 | 11 | 107 | IPR004330 | FAR1 DNA binding domain |
| Pfam | PF03101 | 2.2E-19 | 155 | 254 | IPR004330 | FAR1 DNA binding domain |
| Pfam | PF04434 | 3.8E-6 | 393 | 439 | IPR007527 | Zinc finger, SWIM-type |
| PROSITE profile | PS50966 | 10.225 | 393 | 440 | IPR007527 | Zinc finger, SWIM-type |
| SMART | SM00575 | 2.0E-6 | 415 | 442 | IPR006564 | Zinc finger, PMZ-type |
| Gene Ontology ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| GO Term | GO Category | GO Description | ||||
| GO:0008270 | Molecular Function | zinc ion binding | ||||
| Sequence ? help Back to Top |
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| Protein Sequence Length: 574 aa Download sequence Send to blast |
MYFETEEDAY EFYKAYAARL GFVVRKSNKS KNSRHTVTRR LFVCSKQGFR QEPKKPPQDE 60 AAAASPPPPR CPDSRTGCLA SLTIKLLPSA NAFRVTDFAA EHNHPLASAA PAVSLALLPP 120 SSSHHTIAAV ASLPDPRDGP RTDMHFETED DAYAFYNRYA EHVGFSVRRS YKKRKRGVIV 180 SRIFVCSREG VSDRAKHESI AIVSNNASTG PSGTPRPGPP PTRTGCQARM VIKITPCRTY 240 RVAKFVPEHN HPLANPDSVH KLRSHKMRAR AHELGAGELH RRKHGKALFS ADILTTLRKD 300 NMINDIKREL SEQEDILQFL RRYETMLEEH RSKKLQADVD GSQVTLPIPS LRMLKQASSA 360 YTPEAFKMFQ GEFEAYMNCM SFPCGGLGTI SEYKITLDEK PSESIVKFDA LDGSATCSCR 420 KFESVGIQCC HVLKVLDLKN IKELPEQYIL RRWRKDARSV RIGEEPSGGS SSMRSASEVR 480 FSTMCRFLSL IASRAARSEE ATSYIESQSS VLLKHLDDIL QTGYPDIGNH VVASSSQPIS 540 FVGNQLPDHT SQARGVPQTT NGINLNISAK IIYY |
| Expression -- UniGene ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| UniGene ID | E-value | Expressed in | ||||
| Os.43995 | 0.0 | leaf | ||||
| Expression -- Microarray ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Source | ID | E-value | ||||
| GEO | 37989010 | 0.0 | ||||
| Regulation -- PlantRegMap ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Source | Upstream Regulator | Target Gene | ||||
| PlantRegMap | Retrieve | - | ||||
| Annotation -- Nucleotide ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Source | Hit ID | E-value | Description | |||
| GenBank | AP003956 | 0.0 | AP003956.5 Oryza sativa Japonica Group genomic DNA, chromosome 7, BAC clone:OJ1457_D07. | |||
| GenBank | AP014963 | 0.0 | AP014963.1 Oryza sativa Japonica Group DNA, chromosome 7, cultivar: Nipponbare, complete sequence. | |||
| GenBank | CP012615 | 0.0 | CP012615.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 7 sequence. | |||
| Annotation -- Protein ? help Back to Top | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-value | Description | ||||
| Refseq | XP_015647573.1 | 0.0 | protein FAR1-RELATED SEQUENCE 5 | ||||
| TrEMBL | A2YLI9 | 0.0 | A2YLI9_ORYSI; Uncharacterized protein | ||||
| STRING | ORGLA07G0123500.1 | 0.0 | (Oryza glaberrima) | ||||
| Orthologous Group ? help Back to Top | |||
|---|---|---|---|
| Lineage | Orthologous Group ID | Taxa Number | Gene Number |
| Monocots | OGMP18 | 32 | 967 |
| Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Hit ID | E-value | Description | ||||
| AT4G38180.1 | 1e-21 | FAR1-related sequence 5 | ||||




