PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID BGIOSGA024398-PA
Organism
Oryza sativa subsp. indica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family MYB
Protein Properties Length: 192aa    MW: 22123.4 Da    PI: 10.9082
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
BGIOSGA024398-PAgenomeRISView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding513.4e-162367348
                      SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
   Myb_DNA-binding  3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                      +WT+eEd +l ++ k+ G ++W+++ar m+ +R++ +c++rw+ +l
  BGIOSGA024398-PA 23 AWTPEEDARLQRLAKENGFRRWSRVARSMP-RRSARSCRDRWRHHL 67
                      7*****************************.***********9886 PP
2Myb_DNA-binding23.31.5e-0775118348
                       SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
   Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                       ++T+ +d+ l++++ +lG + Wk I r +  gRt    k+rw+ ++
  BGIOSGA024398-PA  75 PFTARDDDELLRLHYRLGDR-WKEIGRAVY-GRTSRIMKHRWRELR 118
                       79****************99.********9.***********9875 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129418.0841671IPR017930Myb domain
SMARTSM007175.5E-132069IPR001005SANT/Myb domain
SuperFamilySSF466891.51E-2321114IPR009057Homeodomain-like
PfamPF002491.1E-142367IPR001005SANT/Myb domain
CDDcd001672.03E-132367No hitNo description
Gene3DG3DSA:1.10.10.602.4E-192379IPR009057Homeodomain-like
PROSITE profilePS500907.36468118IPR017877Myb-like domain
SMARTSM007170.001672120IPR001005SANT/Myb domain
PfamPF002491.4E-575117IPR001005SANT/Myb domain
CDDcd001677.90E-475117No hitNo description
Gene3DG3DSA:1.10.10.601.5E-880118IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 192 aa     Download sequence    Send to blast
MATPPLPPPP RARCVVRLKL PPAWTPEEDA RLQRLAKENG FRRWSRVARS MPRRSARSCR  60
DRWRHHLARD VYHRPFTARD DDELLRLHYR LGDRWKEIGR AVYGRTSRIM KHRWRELRRS  120
GFPLAATARK VQALDMVESE VEESDQSLPP PELQRSLADA LASSFGYCSL ANEHAMDPLA  180
GSLSLGFACM AV
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gv2_A3e-1724114797MYB PROTO-ONCOGENE PROTEIN
1h88_C1e-162411961156MYB PROTO-ONCOGENE PROTEIN
1h89_C1e-162411961156MYB PROTO-ONCOGENE PROTEIN
1mse_C2e-17241197102C-Myb DNA-Binding Domain
1msf_C2e-17241197102C-Myb DNA-Binding Domain
Search in ModeBase
Expression -- Microarray ? help Back to Top
Source ID E-value
GEO2976103259e-83
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCP0126150.0CP012615.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 7 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015645964.11e-137transcription factor MYB73
TrEMBLQ6Z3W31e-136Q6Z3W3_ORYSJ; Myb-like transcription factor-like
STRINGOS07T0434300-001e-137(Oryza sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP125692035
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G23290.16e-19myb domain protein 70