PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

BGIOSGA024401-PA

Common Name

OsI_25793

Organism

Oryza sativa subsp. indica

Taxonomic ID

39946

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa

Family

HB-other

Protein Properties

Length: 183aa MW: 20733.9 Da PI: 4.4708

Description

HB-other family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
BGIOSGA024401-PA	genome	RIS	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	33.5	6.9e-11	56	94	5	43
SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHH CS Homeobox 5 ttftkeqleeLeelFeknrypsaeereeLAkklgLterq 43 ++t++q++ Le++Fe++ y+ ++r eLAkklg++erq BGIOSGA024401-PA 56 KRHTDDQIKHLESVFERCTYLGGNQRVELAKKLGMEERQ 94 579***********************************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	1.2E-10	41	96	IPR009057	Homeodomain-like
SuperFamily	SSF46689	1.21E-8	50	94	IPR009057	Homeodomain-like
SMART	SM00389	7.5E-4	51	104	IPR001356	Homeobox domain
CDD	cd00086	7.19E-10	53	94	No hit	No description
Pfam	PF00046	2.9E-8	56	94	IPR001356	Homeobox domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 183 aa Download sequence Send to blast
MDNGSQQESS DLHVHHLPIA SVIGVEDRTE EADDAAVDYH DDSSEGQDEV SNKRMKRHTD 60 DQIKHLESVF ERCTYLGGNQ RVELAKKLGM EERQMHDERQ EGMWLQEEND VLHAENKVLK 120 EAMWANICFT CGSPVVPAIP TVQHRYLSFQ NMRLADELQH ATAVFNMVAQ DADVGLATSV 180 PFD

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AP004298	1e-149	AP004298.4 Oryza sativa Japonica Group genomic DNA, chromosome 7, PAC clone:P0409D09.
GenBank	AP005690	1e-149	AP005690.3 Oryza sativa Japonica Group genomic DNA, chromosome 7, BAC clone:OSJNBa0052I14.
GenBank	AP014963	1e-149	AP014963.1 Oryza sativa Japonica Group DNA, chromosome 7, cultivar: Nipponbare, complete sequence.
GenBank	CP012615	1e-149	CP012615.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 7 sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
TrEMBL	A2YKP7	1e-135	A2YKP7_ORYSI; Uncharacterized protein
STRING	ORUFI07G12260.1	1e-131	(Oryza rufipogon)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP14930	16	19

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G61150.1	2e-21	homeodomain GLABROUS 1