PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID BGIOSGA024531-PA
Common NameOsI_25512
Organism
Oryza sativa subsp. indica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family GATA
Protein Properties Length: 137aa    MW: 15656 Da    PI: 10.2029
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
BGIOSGA024531-PAgenomeRISView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA53.82.7e-172255134
              GATA  1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkg 34
                      Cs+C+t+kT+ WR+gp g+k+LCnaCG++y +kg
  BGIOSGA024531-PA 22 CSHCQTSKTSVWRNGPFGPKSLCNACGIRYHRKG 55
                      ******************************9886 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF577162.66E-141456No hitNo description
SMARTSM004015.0E-111668IPR000679Zinc finger, GATA-type
Gene3DG3DSA:3.30.50.101.3E-151773IPR013088Zinc finger, NHR/GATA-type
CDDcd002026.06E-122156No hitNo description
PROSITE profilePS5011411.0952271IPR000679Zinc finger, GATA-type
PfamPF003202.0E-152255IPR000679Zinc finger, GATA-type
PROSITE patternPS0034402247IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 137 aa     Download sequence    Send to blast
MEPESSLHKV VVPLDLNYPR ICSHCQTSKT SVWRNGPFGP KSLCNACGIR YHRKGIDALE  60
LEGKRSKDKK RKTSRNEVPL RRGLRKNNKN AKEVDFGVRM MMEGCQSEPM LTQSQQYEDD  120
VKKAAIQLMY LSRAANT
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
16369KRSKDKK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCP0126151e-163CP012615.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 7 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015646409.12e-99GATA transcription factor 15
TrEMBLA2YJW26e-99A2YJW2_ORYSI; Uncharacterized protein
STRINGONIVA07G07670.16e-99(Oryza nivara)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP18253810
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G26930.12e-13GATA transcription factor 23