PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID BGIOSGA024849-PA
Common NameOsI_24837
Organism
Oryza sativa subsp. indica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family C3H
Protein Properties Length: 477aa    MW: 49758.5 Da    PI: 4.4676
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
BGIOSGA024849-PAgenomeRISView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH23.97.4e-08360386227
                       -S---SGGGGTS.--TTTTT-SS-SSS CS
           zf-CCCH   2 ktelCrffartG.tCkyGdrCkFaHgp 27 
                       kt+lC  ++  G  C++G++Ck+aHg+
  BGIOSGA024849-PA 360 KTKLCAEYYSRGlGCPRGNTCKYAHGE 386
                       7999988888888************96 PP
2zf-CCCH26.41.2e-08421447127
                       --S---SGGGGTS--TTTTT-SS-SSS CS
           zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHgp 27 
                       ykt+lC++f  +G C + ++C+FaHg+
  BGIOSGA024849-PA 421 YKTKLCKTFTSGGLCLFAANCRFAHGE 447
                       9************************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF902291.31E-6357391IPR000571Zinc finger, CCCH-type
SMARTSM003560.018358386IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.479358387IPR000571Zinc finger, CCCH-type
PfamPF006422.9E-6360386IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.103.4E-10360390IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.4E-12419450IPR000571Zinc finger, CCCH-type
SMARTSM003565.9E-6420447IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.202420448IPR000571Zinc finger, CCCH-type
SuperFamilySSF902295.76E-8420450IPR000571Zinc finger, CCCH-type
PfamPF006423.9E-5421447IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010312.774450477IPR000571Zinc finger, CCCH-type
SMARTSM003560.45451477IPR000571Zinc finger, CCCH-type
SuperFamilySSF902293.14E-5451476IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 477 aa     Download sequence    Send to blast
MADSEDGDHV ATTTTEQRYD DDGHLVPSSG GQEEEGSGGR DVVVPGGHVA EDYRSGVGVP  60
VGRDAGGATS SPPQPVHVTP SILVGSIHAP VFQGELVGMK FGVGSGSMGA GTSATRRLPA  120
TGFGALPTSS MAEDSADHAD DDHLAEEEEE EEEEHYIDDG PLVPSSGGQE EEGSGGRHVF  180
VPGGHDGEED HPDDLVADLD LDLLVDGVVG LSPDLYSALS SSAPAAGYRY RHYITSSALA  240
EAGHVSPFLG LPYATAFDSP LDRELVGPSS APPPCSAASR AWLVRCSSPL SDSEWTRRSI  300
LAREAAHTPA STVTGRGRFE FVPIPGAPYA PPPSFAPIAA GAGPAARPLQ QLAFGLEEHK  360
TKLCAEYYSR GLGCPRGNTC KYAHGEDDLR LVVAVSSLAD AGEGSSSSDS SFAALGGEDK  420
YKTKLCKTFT SGGLCLFAAN CRFAHGEVEL GKKEPCWYFF SGQTCPRGDT CGFRHSY
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0038290.0AP003829.2 Oryza sativa Japonica Group genomic DNA, chromosome 7, BAC clone:OJ1417_E01.
GenBankAP0043140.0AP004314.3 Oryza sativa Japonica Group genomic DNA, chromosome 7, PAC clone:P0495H05.
GenBankAP0149630.0AP014963.1 Oryza sativa Japonica Group DNA, chromosome 7, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025882954.10.0putative zinc finger CCCH domain-containing protein 48
SwissprotQ8GVZ80.0C3H48_ORYSJ; Putative zinc finger CCCH domain-containing protein 48
TrEMBLB8B7460.0B8B746_ORYSI; Uncharacterized protein
STRINGOS07T0139000-000.0(Oryza sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP173811111
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G66810.13e-08C3H family protein