PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID BGIOSGA025077-PA
Common NameOsI_24741
Organism
Oryza sativa subsp. indica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family AP2
Protein Properties Length: 558aa    MW: 59214.4 Da    PI: 7.7605
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
BGIOSGA025077-PAgenomeRISView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP239.31.6e-12206262155
               AP2   1 sgykGVrwdkkrgrWvAeIrd.pse.ng.krkrfslgkfgtaeeAakaaiaarkkleg 55 
                       s+y+GV++++++gr++A+++d  ++  g  rk  + g ++ +e+Aa+a++ a++k++g
  BGIOSGA025077-PA 206 SQYRGVTRHRWTGRYEAHLWDnSCKkEGqTRKGRQ-GGYDMEEKAARAYDLAALKYWG 262
                       78*******************77776664346655.77******************98 PP
2AP247.35e-15307356355
               AP2   3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                       y+GV+++++ grW A+I  +s    +k  +lg+f t eeAa+a++ a+ k++g
  BGIOSGA025077-PA 307 YRGVTRHHQHGRWQARIGRVSG---NKDLYLGTFSTQEEAAEAYDVAAIKFRG 356
                       9***************999754...5************************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008479.5E-10206262IPR001471AP2/ERF domain
CDDcd000186.47E-17206270No hitNo description
SuperFamilySSF541712.03E-14206271IPR016177DNA-binding domain
PROSITE profilePS5103217.359207270IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.1E-12207271IPR001471AP2/ERF domain
SMARTSM003808.3E-23207276IPR001471AP2/ERF domain
PRINTSPR003672.9E-6208219IPR001471AP2/ERF domain
CDDcd000181.00E-22305366No hitNo description
SuperFamilySSF541717.19E-18305365IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.101.3E-18306364IPR001471AP2/ERF domain
SMARTSM003801.9E-33306370IPR001471AP2/ERF domain
PROSITE profilePS5103219.296306364IPR001471AP2/ERF domain
PfamPF008472.8E-10307356IPR001471AP2/ERF domain
PRINTSPR003672.9E-6346366IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 558 aa     Download sequence    Send to blast
MTNSNNGNGG TNAAASGWLG FSLSPHMASS TMDEHHHVHH HQQQQQQQQQ QQHHQQQQHG  60
LFFPSVTTAA AAAAYGLAGD ACDLYGGPAA PSLVTAADEE AAAAAAAMAS WVSARGAATA  120
YATGAADANA AENVLPSATA AQHLHHPLAL SMSSGSLSSC ITAGEYGMAA VAAADGGRKR  180
GGAGGGGQKQ PVHHRKSIDT FGQRTSQYRG VTRHRWTGRY EAHLWDNSCK KEGQTRKGRQ  240
GGYDMEEKAA RAYDLAALKY WGPSTHINFP LEDYQEELEE MKNMTRQEYV AHLRRKSSGF  300
SRGASMYRGV TRHHQHGRWQ ARIGRVSGNK DLYLGTFSTQ EEAAEAYDVA AIKFRGLNAV  360
TNFDITRYDV DKIMASNTLL PADLARRNAA TTTSKDDHSA AGAGAIVSVH SAADIAVADT  420
LWKATTAPRQ QQQHHDDVVL SGADQAAFSV LHDLVAVDAA AAHHHQQQQQ HMSMSAASSL  480
VTSLSNSREG SPDRGGGLSM LFAKPSPAVA ASAQQQASTK LMAAPLPLGS WVSSPPASAR  540
PPAVSIAHMP LFAAWTDA
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Os.563210.0panicle
Expression -- Microarray ? help Back to Top
Source ID E-value
GEO329950570.0
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Highly expressed at the base of the stem. Expressed in stems. Expressed a low levels in crown roots and seeds (PubMed:21807632). Expressed in the stem region where adventitious (crown) root initiation occurs (PubMed:21481033). {ECO:0000269|PubMed:21481033, ECO:0000269|PubMed:21807632}.
Functional Description ? help Back to Top
Source Description
UniProtActs as positive regulator of adventitious (crown) root formation by promoting its initiation. Promotes adventitious root initiation through repression of cytokinin signaling by positively regulating the two-component response regulator RR1. Regulated by the auxin response factor and transcriptional activator ARF23/ARF1. {ECO:0000269|PubMed:21481033}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by auxin. {ECO:0000269|PubMed:21481033}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1098480.0AK109848.1 Oryza sativa Japonica Group cDNA clone:002-148-F05, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025882597.10.0AP2-like ethylene-responsive transcription factor CRL5 isoform X2
SwissprotQ84Z020.0CRL5_ORYSJ; AP2-like ethylene-responsive transcription factor CRL5
TrEMBLB8B6V70.0B8B6V7_ORYSI; Uncharacterized protein
STRINGORUFI07G01630.10.0(Oryza rufipogon)
STRINGONIVA07G00600.10.0(Oryza nivara)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP94838133
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37750.11e-128AP2 family protein
Publications ? help Back to Top
  1. Kitomi Y, et al.
    The auxin responsive AP2/ERF transcription factor CROWN ROOTLESS5 is involved in crown root initiation in rice through the induction of OsRR1, a type-A response regulator of cytokinin signaling.
    Plant J., 2011. 67(3): p. 472-84
    [PMID:21481033]
  2. Li P,Xue H
    Structural characterization and expression pattern analysis of the rice PLT gene family.
    Acta Biochim. Biophys. Sin. (Shanghai), 2011. 43(9): p. 688-97
    [PMID:21807632]