PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID BGIOSGA025273-PA
Common NameOsI_25146
Organism
Oryza sativa subsp. indica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family B3
Protein Properties Length: 796aa    MW: 88316.7 Da    PI: 7.9575
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
BGIOSGA025273-PAgenomeRISView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B3505.5e-16124222199
                       EEEE-..-HHHHTT-EE--HHH.HTT.....---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSS CS
                B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.....ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrs 88 
                       f+k+l++sd+  ++r+ +p + a++      + k  ++  l+++d++g  +++ +   ++++r++l+k Wk+F ++ +  +gD+v+F++ + +
  BGIOSGA025273-PA 124 FVKTLMSSDAEYRDRFAVPMDVAKDVfpplvDAKAVQP--LIVKDLQGSPMTFDY--GRNGNRVTLAKVWKKFRDDMDFVDGDSVIFMRRR-D 211
                       89*********************999**9986666676..9**************..*******************************544.8 PP

                       EE..EEEEE-S CS
                B3  89 efelvvkvfrk 99 
                       + el+v+v+r+
  BGIOSGA025273-PA 212 DDELYVGVRRQ 222
                       8889*****97 PP
2B348.12.1e-15504602198
                       EEEE-..-HHHHT.T-EE--HHH.HTT...---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSE CS
                B3   1 ffkvltpsdvlks.grlvlpkkfaeeh...ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrse 89 
                       f+k lt  d+ k+  r+++pk+ a+     +++ +e++ l ++d +g++W ++++++ +   ++l++GW +F++an+L +gD vvF+++  ++
  BGIOSGA025273-PA 504 FVKPLTCTDAVKNrYRFIVPKREAAMGvlpQLQLNEHVPLYIKDMHGKEWVINYTWKEYT--HMLSSGWIKFANANRLVTGDNVVFMRSM-DS 593
                       56666655555554899*******766999555568888***************776665..99***********************765.44 PP

                       E..EEEEE- CS
                B3  90 felvvkvfr 98 
                       +e +++++r
  BGIOSGA025273-PA 594 GERYMGLRR 602
                       444666655 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.106.3E-17118224IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.57E-16119228IPR015300DNA-binding pseudobarrel domain
CDDcd100174.56E-12122221No hitNo description
PfamPF023625.1E-13124222IPR003340B3 DNA binding domain
SMARTSM010191.8E-9124223IPR003340B3 DNA binding domain
PROSITE profilePS5086310.983124223IPR003340B3 DNA binding domain
SuperFamilySSF1019365.62E-17501601IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.105.1E-20502603IPR015300DNA-binding pseudobarrel domain
CDDcd100173.42E-15503602No hitNo description
PfamPF023621.6E-11504601IPR003340B3 DNA binding domain
SMARTSM010194.0E-5504604IPR003340B3 DNA binding domain
PROSITE profilePS5086313.155505604IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 796 aa     Download sequence    Send to blast
MAAAAAPLAD DGDGIVDRAM WLACAAPNSG RLPAVGSMVF YFVDGHAEQF CQFPAPLLEQ  60
LAVPGPRVFL CTVAAVRLRA DALTNEAYAD ITLDPVADHD VPRLLPAPAP AAAAGGQQQQ  120
LRYFVKTLMS SDAEYRDRFA VPMDVAKDVF PPLVDAKAVQ PLIVKDLQGS PMTFDYGRNG  180
NRVTLAKVWK KFRDDMDFVD GDSVIFMRRR DDDELYVGVR RQRTLDKPLR TRRSRPPTPL  240
PVAVQEVIAA AGRAAAGEQF TATYRSRQDG DEFVVPREVV EEGLRLRSRF TPEMEVEFVW  300
ALEDGAPPSV GPHGKITAIH DTTWMWRSVE IGWTGGSEMN KYANFWQVRL VGSDDFASAA  360
PPPPLSPKRL KSSEDHLPPP KASASAAAAK ASPSSSAQAQ QFSITREMWR ACAAPKSGRL  420
PAVGSFVYYF PDGHAQQCPS RPPEPLPGRV FLCKVTAVRL DATRNELFAT MSLIPVARDQ  480
AIQPQAPADP GPSSPQVKTT LVSFVKPLTC TDAVKNRYRF IVPKREAAMG VLPQLQLNEH  540
VPLYIKDMHG KEWVINYTWK EYTHMLSSGW IKFANANRLV TGDNVVFMRS MDSGERYMGL  600
RRTLKPEPVS VDEVIEAVWR AARLEPFEVA YLSRQDGDEF VVPLPNVGPQ GKVIAIENYA  660
TSIWRMIQVE WPSCAGMNRY VNFWQIREVL GESSFEASTC IVRSQDYSPA PQRNLVNALQ  720
LPDGTKQLQQ NKKSVSSSST FRLFGKKMTP GVPPRRDTSG LSGQVSLFSH YLPHDEDDGQ  780
VPTMRQRLET LFPDNI
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldv_A1e-2416861352Auxin response factor 1
4ldw_A1e-2416861352Auxin response factor 1
4ldw_B1e-2416861352Auxin response factor 1
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Os.520710.0panicle
Expression -- Microarray ? help Back to Top
Source ID E-value
GEO329746790.0
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCP0126150.0CP012615.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 7 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025882777.10.0B3 domain-containing protein Os07g0183300/Os07g0183600
SwissprotQ8H5060.0Y7833_ORYSJ; B3 domain-containing protein Os07g0183300/Os07g0183600
TrEMBLB8B7V60.0B8B7V6_ORYSI; Uncharacterized protein
STRINGOMERI05G17190.10.0(Oryza meridionalis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP157921114
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G30080.11e-25auxin response factor 16