PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID BGIOSGA025276-PA
Common NameOsI_25149
Organism
Oryza sativa subsp. indica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family ARF
Protein Properties Length: 541aa    MW: 55598.2 Da    PI: 4.7243
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
BGIOSGA025276-PAgenomeRISView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B353.73.9e-17354450199
                       EEEE-..-HHHHTT-EE--HHH.HTT.....---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSS CS
                B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.....ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrs 88 
                       f+k lt  dv+k++ +++pk+ a++      +++   ++ l+++d+sg++W ++++++ + ++  +++GW eF +angL +gD  vF+  +r 
  BGIOSGA025276-PA 354 FVKPLTYTDVTKNR-FMVPKDDAAAGvlphiQLN--DDVPLRIKDLSGKEWAFNYTWKAHTRM--FRNGWMEFSNANGLVTGDNAVFM--RRG 439
                       88999999999985.999*****88899966444..6778***************87777655..9**********************..557 PP

                       EE..EEEEE-S CS
                B3  89 efelvvkvfrk 99 
                       ++e+++ v+r+
  BGIOSGA025276-PA 440 NGEMFMAVRRT 450
                       88888888886 PP
2Auxin_resp24.31.4e-09467534368
        Auxin_resp   3 haastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrl..sGtvvgvsd 68 
                        +a+ +++Fev Y+ r+   eFvv+++ v + l+ ++++Gm + +    ed +  ++  +G v+++++
  BGIOSGA025276-PA 467 WRAARREPFEVSYCSRQDGDEFVVPRDIVDDGLRARFAPGMAVNFVWAVEDGKLPTIgpQGEVISIEN 534
                       5678999***********************************99999999877766666899988876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019363.14E-19351452IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.101.1E-19352454IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086313.493353451IPR003340B3 DNA binding domain
CDDcd100178.58E-16353445No hitNo description
SMARTSM010191.3E-10354451IPR003340B3 DNA binding domain
PfamPF023623.8E-13354449IPR003340B3 DNA binding domain
PfamPF065078.6E-6468535IPR010525Auxin response factor
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009734Biological Processauxin-activated signaling pathway
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 541 aa     Download sequence    Send to blast
MAADPNLPGR GGATSSPMVS SLGGVDGEGA PPPSPILAAL ALSTVSAASS APATGATVSP  60
LVSNLGGVDG ESAPCAPPPS PTVPASSTVS AASSAPATGS TSSLSSLGGV DGEGAPCAPP  120
PSPIPAGPAS STVSAASSAP ATRDYLGGIT GHRLGQEDDS GGHEYTSVSG IHVPSSSGVA  180
FVSFGQCPQE VISSDLRLGL GPIAATAPLQ PPPPPAAAAA AGSPSATTPE PGHGEATPTT  240
SSSAQFQTQA QQVTRDMWMA CAAPKSGRLP TVGSLVYYFP DGHAEQCLSR PQEPLPGRIF  300
LCKVTDVRLG AAATNEALAT ISLVPIAADD HAFQLQAPAD PDPAPAQSQS LVSFVKPLTY  360
TDVTKNRFMV PKDDAAAGVL PHIQLNDDVP LRIKDLSGKE WAFNYTWKAH TRMFRNGWME  420
FSNANGLVTG DNAVFMRRGN GEMFMAVRRT RNRPAPFSVE EVIEAVWRAA RREPFEVSYC  480
SRQDGDEFVV PRDIVDDGLR ARFAPGMAVN FVWAVEDGKL PTIGPQGEVI SIENYATSIG  540
A
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldy_A6e-1925344919224Auxin response factor 1
4ldy_B6e-1925344919224Auxin response factor 1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCP0126150.0CP012615.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 7 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025882780.10.0B3 domain-containing protein Os07g0183700
SwissprotA3BH910.0Y7838_ORYSJ; B3 domain-containing protein Os07g0183700
TrEMBLA2YIU70.0A2YIU7_ORYSI; Auxin response factor
STRINGOMERI05G17150.10.0(Oryza meridionalis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP2628755
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G30080.12e-25auxin response factor 16