PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID BGIOSGA025388-PA
Common NameOsI_25355
Organism
Oryza sativa subsp. indica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family bHLH
Protein Properties Length: 636aa    MW: 69713 Da    PI: 4.8559
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
BGIOSGA025388-PAgenomeRISView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH11.40.000594774993355
                       .TTS-STCHHHHHHHHHHHHHHH CS
               HLH  33 apskKlsKaeiLekAveYIksLq 55 
                        p + ++Ka+iL  ++eY+k+L+
  BGIOSGA025388-PA 477 YPYPPMDKASILGDTIEYVKQLR 499
                       566789***************95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF142151.1E-467200IPR025610Transcription factor MYC/MYB N-terminal
SuperFamilySSF474595.63E-5479516IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.104.1E-5481508IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010026Biological Processtrichome differentiation
GO:0010214Biological Processseed coat development
GO:0000976Molecular Functiontranscription regulatory region sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 636 aa     Download sequence    Send to blast
MAGGEAQAAL QAVAQSLRWT YSLLWQLCPH QGSSLVWGEG HYNGAVKTRK STVMQPPPAE  60
EEDDADHAAR HRSRQLRELY DWLQQAGENS SGGVQTSSTT ASRRPGAALS PEDLTETEWF  120
FLMSASYSFP PGIGLPGRAF ARRGHVWLTG ANEVDSKVFL RAILAKTVVC IPVVDGVLEI  180
GTTEKVEEDM GLIQYARGIF MDQHGIHMKP TLSQHSTSNP VTHCTHQHPI QVQMQLGITS  240
QTKFDYSDEL NADEENDDTE EEGMSGSDTN NTDTERNSGQ LQLQMQDQLN MVSNDHQTIP  300
NNAVSSELMQ CEMSEVVRDG CSNNILEDEI QMLMDCQNSN CQLNLQGPDE PCHSWHFLCE  360
ELQNDYQPAT EDQVASPENT HYPKTLMTIL HYNTLRQQEM NIKNYLPVSE KSSFSRWTTP  420
EGSDDNKTMI SPGTTQRMLK SILMIVPSSH CSYRGAETPE SRGGKGASGC HPRSESYPYP  480
PMDKASILGD TIEYVKQLRN RIQELESSSS SSRAAARAPS AAAAGRRRKR SAAAATATAA  540
EGMSSSNGRN GGEAAEVVQV SIIESDALLE LRCGCGGGGG GVVLLRVMQA MQELQLEVTA  600
VQASCAGGEL LAELRAKVVV MILICMKMQM QMQMQN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4rqw_A2e-19720010192Transcription factor MYC3
4rqw_B2e-19720010192Transcription factor MYC3
4rs9_A2e-19720010192Transcription factor MYC3
4yz6_A2e-19720010192Transcription factor MYC3
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJF3030600.0JF303060.1 Oryza sativa Indica Group EM93-1 truncated bHLH transcription factor (SD7-1/Rc) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015646360.20.0LOW QUALITY PROTEIN: basic helix-loop-helix protein A-like
TrEMBLA2YJE30.0A2YJE3_ORYSI; Uncharacterized protein
STRINGONIVA07G05400.10.0(Oryza nivara)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP88633036
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G09820.11e-62bHLH family protein