PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID BGIOSGA025537-PA
Common NameOsI_25675
Organism
Oryza sativa subsp. indica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family FAR1
Protein Properties Length: 550aa    MW: 62011.9 Da    PI: 8.3419
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
BGIOSGA025537-PAgenomeRISView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR163.18e-2061141190
              FAR1   1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 
                       ++Yn+YA ++GFs+rks+ k++  ng+i+++  vCs++g+r+++++          +trt+C+a+++ +  ++g w v+k++leHnH l+
  BGIOSGA025537-PA  61 DMYNTYAGKIGFSIRKSQAKHR-VNGTIYQKYIVCSNQGQRQTKSSL--------DTTRTSCDACVQFSICRKGIWTVQKVVLEHNHCLV 141
                       58***************98876.9999**************998766........99******************************997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031016.0E-1662141IPR004330FAR1 DNA binding domain
PROSITE profilePS509669.878317355IPR007527Zinc finger, SWIM-type
PfamPF044348.4E-7327353IPR007527Zinc finger, SWIM-type
SMARTSM005756.4E-7330357IPR006564Zinc finger, PMZ-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 550 aa     Download sequence    Send to blast
MEEDVAGAID ANANGDDNTL CHIVPEEMAD KAPNQANDKV AQTLILPQVG MAFDSEQKVY  60
DMYNTYAGKI GFSIRKSQAK HRVNGTIYQK YIVCSNQGQR QTKSSLDTTR TSCDACVQFS  120
ICRKGIWTVQ KVVLEHNHCL VSPNKSHKLR SQRRVIEADR QLIGQIREAG MKPAQVYEFM  180
KEWYGGADKV EGKWSIVFRD SFTADMTSTQ RSEGMNNVFK KRFRRKLGLS ELLVECDKVA  240
ASLRENELDA DFKSRNSSPV TCIPNLPMLK TAADSYTRKM YSEFEEEFTK QFSLSCKLLQ  300
TEGSILTFMV MPMESDQEAT IVYNTADMTI TCSCRTYESI GILCKHALRV FNMNEVFTMP  360
SQYILNRWTK YAKKGFNIDK QGSEKETLKT HAARISRKAT SIALKCSVSK ELLDDLEKAI  420
NNLDLEADSS LSKMQEKTCE VPLNSNDCVM DTLNGAISIR VPRVVKGPKS RRSKDAVEKK  480
KRKKTKTAKN KGEDLNNASE DEDEDVGDVC GQSSTMAAND VCGQHMMCMG NPRQWLHMMG  540
LGNPRPWMLL
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1479483KKRKK
Expression -- Microarray ? help Back to Top
Source ID E-value
GEO2976085190.0
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1376990.0AC137699.1 Genomic sequence for Oryza sativa, Nipponbare strain, clone OSJNBb0029K10, from chromosome 3, complete sequence.
GenBankAP0149590.0AP014959.1 Oryza sativa Japonica Group DNA, chromosome 3, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015629720.10.0protein FAR1-RELATED SEQUENCE 5-like
TrEMBLB8B5800.0B8B580_ORYSI; Uncharacterized protein
STRINGSb04g027010.10.0(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP1508638
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38180.12e-31FAR1-related sequence 5