PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID BGIOSGA025611-PA
Common NameOsI_25830
Organism
Oryza sativa subsp. indica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family MYB_related
Protein Properties Length: 75aa    MW: 8697.81 Da    PI: 6.5268
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
BGIOSGA025611-PAgenomeRISView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding34.64.5e-11448344
                      SS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHH CS
   Myb_DNA-binding  3 rWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrw 44
                       W++eE +l+ +a++ +G g    W++++r mg ++t+ +++ ++
  BGIOSGA025611-PA  4 EWSKEENKLFEQAIAYYGEGapdLWHKVSRAMGGTKTADEVRRHF 48
                      7*******************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129410.221156IPR017930Myb domain
SMARTSM007173.3E-7154IPR001005SANT/Myb domain
SuperFamilySSF466891.05E-11359IPR009057Homeodomain-like
PfamPF002492.7E-9448IPR001005SANT/Myb domain
CDDcd001675.43E-6448No hitNo description
Gene3DG3DSA:1.10.10.601.9E-5451IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 75 aa     Download sequence    Send to blast
MASEWSKEEN KLFEQAIAYY GEGAPDLWHK VSRAMGGTKT ADEVRRHFEI LVDDIKLIEA  60
RRVPFPKYNT QGAWN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2cjj_A2e-205731178RADIALIS
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Os.399671e-127leaf
Expression -- Microarray ? help Back to Top
Source ID E-value
GEO1172193061e-127
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed just outside the vascular bundles in the rosette stem and the leaf traces. Not detected in floral primordia. {ECO:0000269|PubMed:17672842}.
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCP0126151e-124CP012615.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 7 sequence.
GenBankCT8361431e-124CT836143.1 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCSA059E21, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003569501.13e-39protein RADIALIS-like 3
SwissprotQ6NNN07e-22RADL3_ARATH; Protein RADIALIS-like 3
TrEMBLA0A0E0GZJ72e-49A0A0E0GZJ7_ORYNI; Uncharacterized protein
TrEMBLA2YKT62e-49A2YKT6_ORYSI; Uncharacterized protein
TrEMBLI1QAD22e-49I1QAD2_ORYGL; Uncharacterized protein
STRINGONIVA04G07260.13e-50(Oryza nivara)
STRINGORGLA07G0107400.13e-50(Oryza glaberrima)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP106733121
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G75250.22e-22RAD-like 6