PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

BGIOSGA025776-PA

Common Name

OsI_26149

Organism

Oryza sativa subsp. indica

Taxonomic ID

39946

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa

Family

Dof

Protein Properties

Length: 301aa MW: 29418.8 Da PI: 7.5706

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
BGIOSGA025776-PA	genome	RIS	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	72.3	6.7e-23	4	47	19	62
zf-Dof 19 CyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkkss 62 Cy++ ++ Pr+fCkaC+ryWt+GG+lrnvPvGgg+rknk+s+ BGIOSGA025776-PA 4 CYHDSTTTPLPRHFCKACKRYWTRGGTLRNVPVGGGCRKNKRSR 47 9****************************************986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50884	19.368	1	45	IPR003851	Zinc finger, Dof-type
ProDom	PD007478	4.0E-15	4	44	IPR003851	Zinc finger, Dof-type
Pfam	PF02701	2.6E-17	4	45	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 301 aa Download sequence Send to blast
MARCYHDSTT TPLPRHFCKA CKRYWTRGGT LRNVPVGGGC RKNKRSRSGG AAPGGGVGRG 60 GPGGGAAAAV SSAGGGAAGT SPASSLALPQ PGSLPSLSSA LGLTGGTSLA SLLLGSGGSG 120 GDHLGLFQAM QSVVSDAAAF EMHQQHQSQV DHLLGLGYGA AGAQIQAAKP WLHDGGATGG 180 LLDGFYAPLL SGSIVPGLEE LQVKAEATTG DHQQKSSAAA AGEQSWDLPT PSSSNVEASI 240 IASDALMAAA AASMNPAVSA AAASTAPSAQ SLLYWGNGGI GAAAAAWPDL ANCGSSIATL 300 F

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Os.58643	0.0	callus\| panicle

Expression -- Microarray ? help Back to Top
Source	ID	E-value
GEO	115472294	0.0

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	CP012615	0.0	CP012615.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 7 sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015647864.1	1e-122	dof zinc finger protein DOF5.4
TrEMBL	A2YLP7	0.0	A2YLP7_ORYSI; Uncharacterized protein
STRING	ORGLA07G0128800.1	1e-122	(Oryza glaberrima)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP8895	30	41

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G60200.1	3e-17	TARGET OF MONOPTEROS 6