PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID BGIOSGA025964-PA
Organism
Oryza sativa subsp. indica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family GRAS
Protein Properties Length: 441aa    MW: 47586.8 Da    PI: 5.594
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
BGIOSGA025964-PAgenomeRISView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS361.21.5e-110534182374
              GRAS   2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfs 94 
                        +lLl+cAeav+ ++l +a+ lL ++ elasp g++ +R+aayf  AL ar+++s  + y+ l+ ++ +  +s +   a+++++ +sP++kfs
  BGIOSGA025964-PA  53 LSLLLRCAEAVAMDQLPEARDLLPEIAELASPFGSSPERVAAYFGDALCARVLSSYLGAYSPLALRPLAAAQSRRISGAFQAYNALSPLVKFS 145
                       689******************************************************************999********************* PP

              GRAS  95 hltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrle 187
                       h+taNqaI +a++ge+rvH+iD+di+qGlQWp L++ LasRp +p slRiTg+g+    s + le+tg+rLa+fA++lg+pfef+++  k  +
  BGIOSGA025964-PA 146 HFTANQAIFQALDGEDRVHVIDLDIMQGLQWPGLFHILASRPTKPRSLRITGLGA----SLDVLEATGRRLADFAASLGLPFEFRPIEGKIGH 234
                       *******************************************************....9**************************7666555 PP

              GRAS 188 dleleeLrvkp..gEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpre 278
                         +  +L   +  gEa++V++++  h l+d ++s +     +++l+ksl+Pk++++veq++ h s++Fl rf+eal+yysalfd+l  +++++
  BGIOSGA025964-PA 235 VADAAALLGPRhhGEATVVHWMH--HCLYDVTGSDAG----TVRLLKSLRPKLITIVEQDLGH-SGDFLGRFVEALHYYSALFDALGDGAGAA 320
                       5566666443358*********9..888888888888....**********************.899*******************5443333 PP

              GRAS 279 s...eerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLv 368
                       +    er+ vEr+llg ei+n+va  g +r+ + + +e+W + l++aGF+pv+l  + a+qa+lll +++++gy++ ee+g+l lgWkd +L+
  BGIOSGA025964-PA 321 EeeaAERHAVERQLLGAEIRNIVAVGGPKRTGEVR-VERWGDELRRAGFRPVTLAGSPAAQARLLLGMYPWKGYTLVEEDGCLKLGWKDLSLL 412
                       323699***********************998887.9******************************************************** PP

              GRAS 369 svSaWr 374
                       ++S+W+
  BGIOSGA025964-PA 413 TASSWE 418
                       *****5 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098557.63826398IPR005202Transcription factor GRAS
PfamPF035145.2E-10853418IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0048366Biological Processleaf development
GO:0090610Biological Processbundle sheath cell fate specification
GO:0005634Cellular Componentnucleus
Sequence ? help Back to Top
Protein Sequence    Length: 441 aa     Download sequence    Send to blast
MKAKRAADDE EEGGERERAR GKRLAAEGKQ GLVVVSTGEE EEAAAETRGL RLLSLLLRCA  60
EAVAMDQLPE ARDLLPEIAE LASPFGSSPE RVAAYFGDAL CARVLSSYLG AYSPLALRPL  120
AAAQSRRISG AFQAYNALSP LVKFSHFTAN QAIFQALDGE DRVHVIDLDI MQGLQWPGLF  180
HILASRPTKP RSLRITGLGA SLDVLEATGR RLADFAASLG LPFEFRPIEG KIGHVADAAA  240
LLGPRHHGEA TVVHWMHHCL YDVTGSDAGT VRLLKSLRPK LITIVEQDLG HSGDFLGRFV  300
EALHYYSALF DALGDGAGAA EEEAAERHAV ERQLLGAEIR NIVAVGGPKR TGEVRVERWG  360
DELRRAGFRP VTLAGSPAAQ ARLLLGMYPW KGYTLVEEDG CLKLGWKDLS LLTASSWEPT  420
DGDADADVAV AGDTHHESHD S
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_A1e-1565841925380Protein SCARECROW
5b3h_A1e-1565841924379Protein SCARECROW
5b3h_D1e-1565841924379Protein SCARECROW
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Os.370320.0flower| stem
Expression -- Microarray ? help Back to Top
Source ID E-value
GEO379897630.0
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in seedlings, cotyledons, shoot apex, leaves and flowers.
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in plant development. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0038660.0AP003866.3 Oryza sativa Japonica Group genomic DNA, chromosome 7, BAC clone:OJ1092_A07.
GenBankAP0149630.0AP014963.1 Oryza sativa Japonica Group DNA, chromosome 7, cultivar: Nipponbare, complete sequence.
GenBankCP0126150.0CP012615.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 7 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015644982.10.0scarecrow-like protein 23
SwissprotQ9FHZ11e-172SCL23_ARATH; Scarecrow-like protein 23
TrEMBLA0A0E0I2G60.0A0A0E0I2G6_ORYNI; Uncharacterized protein
TrEMBLA0A0E0QA150.0A0A0E0QA15_ORYRU; Uncharacterized protein
TrEMBLA0A0P0X7S90.0A0A0P0X7S9_ORYSJ; Os07g0567700 protein
STRINGORUFI07G19860.10.0(Oryza rufipogon)
STRINGOS07T0567700-020.0(Oryza sativa)
STRINGONIVA07G17430.10.0(Oryza nivara)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP137138122
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G41920.11e-155GRAS family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Yoon EK, et al.
    Conservation and Diversification of the SHR-SCR-SCL23 Regulatory Network in the Development of the Functional Endodermis in Arabidopsis Shoots.
    Mol Plant, 2016. 9(8): p. 1197-1209
    [PMID:27353361]