PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID BGIOSGA025976-PA
Common NameOsI_26553
Organism
Oryza sativa subsp. indica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family YABBY
Protein Properties Length: 129aa    MW: 14252.6 Da    PI: 11.636
Description YABBY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
BGIOSGA025976-PAgenomeRISView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1YABBY27.41e-081241635
             YABBY  6 sseqvCyvqCnfCntilavsvPstslfkvv 35
                        e++  vqC+fC t+l+vsvP +s+++vv
  BGIOSGA025976-PA 12 LRERLGCVQCSFCATVLLVSVPCSSVLRVV 41
                      5689999********************999 PP
2YABBY89.21.1e-2772123118169
             YABBY 118 PPekrqrvPsaynrfikeeiqrikasnPdishreafsaaaknWahfPkihfg 169
                        P ++qr Psayn+f+keei+rik+  P+i+h++afs+aaknWah+P+i  +
  BGIOSGA025976-PA  72 APGRKQRTPSAYNCFVKEEIKRIKSMEPNITHKQAFSTAAKNWAHLPRIQQK 123
                       6999********************************************9865 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF046905.4E-71341IPR006780YABBY protein
SuperFamilySSF470953.67E-770119IPR009071High mobility group box domain
PfamPF046902.4E-2670122IPR006780YABBY protein
Gene3DG3DSA:1.10.30.105.5E-574122IPR009071High mobility group box domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009944Biological Processpolarity specification of adaxial/abaxial axis
GO:0048481Biological Processplant ovule development
GO:0005634Cellular Componentnucleus
Sequence ? help Back to Top
Protein Sequence    Length: 129 aa     Download sequence    Send to blast
MSSAARHHCS GLRERLGCVQ CSFCATVLLV SVPCSSVLRV VGRAVRPLLR HPLRRQPAAV  60
AGVGVHRADS TAPGRKQRTP SAYNCFVKEE IKRIKSMEPN ITHKQAFSTA AKNWAHLPRI  120
QQKRGRDSC
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Os.477811e-115flower
Expression -- Microarray ? help Back to Top
Source ID E-value
GEO329826411e-115
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in leaf sheaths and flowers. {ECO:0000269|PubMed:17216490}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB2740191e-113AB274019.1 Oryza sativa Japonica Group OsYABBY7 mRNA for OsYABBY7 protein, complete cds.
GenBankAK0726181e-113AK072618.1 Oryza sativa Japonica Group cDNA clone:J023130N03, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015647119.12e-52protein YABBY 7 isoform X2
SwissprotA2PZN81e-53YAB7_ORYSJ; Protein YABBY 7
TrEMBLA2YMU83e-89A2YMU8_ORYSI; Uncharacterized protein
STRINGOMERI07G16360.28e-54(Oryza meridionalis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP136252831
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G23420.12e-20YABBY family protein