PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID BGIOSGA026045-PA
Common NameOsI_26683
Organism
Oryza sativa subsp. indica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family C2H2
Protein Properties Length: 220aa    MW: 22139.8 Da    PI: 8.138
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
BGIOSGA026045-PAgenomeRISView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H210.90.0014137159123
                       EEETTTTEEESSHHHHHHHHHHT CS
           zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                       ++C++C ++F++   L  H r+H
  BGIOSGA026045-PA 137 HRCSICLRTFPSGQALGGHKRLH 159
                       79*****************9998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS501579.80687114IPR007087Zinc finger, C2H2
SuperFamilySSF576672.5E-787159No hitNo description
SMARTSM003550.06387109IPR015880Zinc finger, C2H2-like
PfamPF139123.7E-1387111IPR007087Zinc finger, C2H2
PROSITE patternPS00028089109IPR007087Zinc finger, C2H2
PfamPF139121.2E-12136161IPR007087Zinc finger, C2H2
PROSITE profilePS501579.162137159IPR007087Zinc finger, C2H2
SMARTSM003550.27137159IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280139159IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 220 aa     Download sequence    Send to blast
MALDGKPPVP PPSTPPMDSW ACGGRRSKRR GGGGGSSGSS GSSGGGGGGE SEEEYLAACL  60
LMLAHGVRDE AEVVGVAAAT AKPQHGYECS VCGKVYGSYQ ALGGHKTSHR KPPSPAAEPA  120
AGEEPSSGGV AGEAKVHRCS ICLRTFPSGQ ALGGHKRLHY EGGAVGDAVK EKNSLKTKAA  180
VATAVLKDFD LNLPAAATTA GDEAESSPPE AKRARLLLLV
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Os.555610.0panicle
Expression -- Microarray ? help Back to Top
Source ID E-value
GEO329935290.0
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0051490.0AP005149.4 Oryza sativa Japonica Group genomic DNA, chromosome 7, BAC clone:OSJNBb0005G07.
GenBankAP0149630.0AP014963.1 Oryza sativa Japonica Group DNA, chromosome 7, cultivar: Nipponbare, complete sequence.
GenBankCP0126150.0CP012615.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 7 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015647209.11e-155zinc finger protein 1
TrEMBLA2YN721e-154A2YN72_ORYSI; Uncharacterized protein
TrEMBLQ7EZ271e-154Q7EZ27_ORYSJ; Os07g0588600 protein
STRINGOS07T0588600-011e-154(Oryza sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP100282335
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G49930.13e-26C2H2 family protein