PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID BGIOSGA026046-PA
Common NameOsI_26684
Organism
Oryza sativa subsp. indica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family C2H2
Protein Properties Length: 151aa    MW: 16218.8 Da    PI: 7.7861
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
BGIOSGA026046-PAgenomeRISView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H212.10.000616890123
                      EEETTTTEEESSHHHHHHHHHHT CS
           zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                      +kC++C   F++   L  H+r+H
  BGIOSGA026046-PA 68 HKCSICRLEFPSGQALGGHMRVH 90
                      79*******************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576674.98E-82090No hitNo description
PfamPF139125.2E-92145IPR007087Zinc finger, C2H2
SMARTSM003550.892244IPR015880Zinc finger, C2H2-like
PROSITE profilePS501578.6632244IPR007087Zinc finger, C2H2
PROSITE patternPS0002802444IPR007087Zinc finger, C2H2
SMARTSM003550.0256890IPR015880Zinc finger, C2H2-like
PROSITE profilePS501578.6216890IPR007087Zinc finger, C2H2
PfamPF139122.9E-96890IPR007087Zinc finger, C2H2
PROSITE patternPS0002807090IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 151 aa     Download sequence    Send to blast
MGDVKGVGVD TLELVKPSQR AYECSVCGKV YWCYQALGGH MTCHRNLFAQ VVAGDELSSD  60
GTMVVKGHKC SICRLEFPSG QALGGHMRVH YVCGVEGGSV KEKNVVKTKV TGALKLVLKD  120
FDLNVLVVAT MVGDEAESSH SEAKARMMTL P
Expression -- Microarray ? help Back to Top
Source ID E-value
GEO376238800.0
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCP0126150.0CP012615.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 7 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015647208.11e-104zinc finger protein AZF3
TrEMBLA2YN731e-106A2YN73_ORYSI; Uncharacterized protein
STRINGONIVA07G19010.11e-106(Oryza nivara)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP100282335
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G49930.17e-20C2H2 family protein