PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID BGIOSGA026135-PA
Common NameOsI_26867
Organism
Oryza sativa subsp. indica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family FAR1
Protein Properties Length: 512aa    MW: 56823.7 Da    PI: 7.7866
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
BGIOSGA026135-PAgenomeRISView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA45.41.1e-14128164135
              GATA   1 CsnCgttk..TplWRrgpdgnktLCnaCGlyyrkkgl 35 
                       C  Cg +   Tp++Rrgpdg++tLCnaCG+ yrk ++
  BGIOSGA026135-PA 128 CLRCGISGnaTPHMRRGPDGPRTLCNACGIAYRKGKM 164
                       5667777777************************876 PP
2FAR185.67.9e-27198285191
              FAR1   1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHelap 91 
                       +fYn+YA +vGFsvrks+s+ks+ n  ++ rtfvCs+eg+++++k+   +++++r  tr+gC a+l +k + ++k++vt+++ eHnH+lap
  BGIOSGA026135-PA 198 EFYNKYAGHVGFSVRKSTSHKSSGN-ITKVRTFVCSREGYNRDKKSL--EAKKPRLDTRIGCPARLIIKVTPESKYRVTDFKAEHNHQLAP 285
                       6********************9444.47889************9988..99*************************************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF577161.52E-10124175No hitNo description
SMARTSM004016.5E-6124177IPR000679Zinc finger, GATA-type
Gene3DG3DSA:3.30.50.102.5E-11127166IPR013088Zinc finger, NHR/GATA-type
PfamPF003208.3E-12128163IPR000679Zinc finger, GATA-type
CDDcd002024.76E-7138165No hitNo description
PfamPF031013.8E-24198285IPR004330FAR1 DNA binding domain
PROSITE profilePS509669.755397444IPR007527Zinc finger, SWIM-type
PfamPF044344.3E-5415443IPR007527Zinc finger, SWIM-type
SMARTSM005755.1E-6419446IPR006564Zinc finger, PMZ-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 512 aa     Download sequence    Send to blast
MAIDGFLLLS NSLAAAAAAF SSALSATCTP EMRRRLAGGP QDRCPHTSAI SEGTGYSTRW  60
ERGYTWHHTG GGGGDAMMHM LVAPDGGGGG EMPPPYGGAA AAPPPPMEQE LELHRDNADD  120
GLDGHVRCLR CGISGNATPH MRRGPDGPRT LCNACGIAYR KGKMRRMIEA EPPIDEAALA  180
KLVPEVGMEF ESEDKAYEFY NKYAGHVGFS VRKSTSHKSS GNITKVRTFV CSREGYNRDK  240
KSLEAKKPRL DTRIGCPARL IIKVTPESKY RVTDFKAEHN HQLAPPSTMH MLRSQRILTE  300
LQSGEAELSD DSVMTPTTKA TGDLVHYERA VDEHRYAELQ ADFQASQSYP RIPPAKMLKQ  360
AAHTYTPVVF EIFRKEFELF MDSVLFSCGE AGTTSEYKVA PSEKPKEHFV RFDSSDCSCI  420
CTCRKFEFMG IPCCHMLKVL DYRNIKELPQ RYLLKRWRRT AKSANEENQG TLLFLICMRI  480
HFAEAHDAGD LNLNIIPSAR CPLHDTGVEA VR
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Os.138760.0callus| flower| leaf| panicle| root| seed| stem
Expression -- Microarray ? help Back to Top
Source ID E-value
GEO329763350.0
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK0663170.0AK066317.1 Oryza sativa Japonica Group cDNA clone:J013064I12, full insert sequence.
GenBankAK0738030.0AK073803.1 Oryza sativa Japonica Group cDNA clone:J033068D01, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006657954.11e-160PREDICTED: protein FAR1-RELATED SEQUENCE 5-like
TrEMBLA2YNP50.0A2YNP5_ORYSI; Uncharacterized protein
STRINGOB07G27730.11e-159(Oryza brachyantha)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP1832967
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38180.17e-21FAR1-related sequence 5