PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

BGIOSGA026156-PA

Common Name

OsI_26894

Organism

Oryza sativa subsp. indica

Taxonomic ID

39946

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa

Family

HB-other

Protein Properties

Length: 1173aa MW: 132495 Da PI: 7.9695

Description

HB-other family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
BGIOSGA026156-PA	genome	RIS	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	46	8.8e-15	21	73	5	57
SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHHC CS Homeobox 5 ttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakekk 57 t+ ++ q++ Le+++ + +yp+ e+++e A+++gLt +qV++WF+ rR ke++ BGIOSGA026156-PA 21 TKKSPLQIQMLERFYSEVQYPQSEDIAEYATSVGLTYNQVRIWFKERRRKERR 73 567899*********************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	1.4E-14	13	74	IPR009057	Homeodomain-like
PROSITE profile	PS50071	15.013	14	74	IPR001356	Homeobox domain
SMART	SM00389	2.0E-14	16	78	IPR001356	Homeobox domain
SuperFamily	SSF46689	3.42E-13	16	78	IPR009057	Homeodomain-like
Pfam	PF00046	4.2E-12	21	73	IPR001356	Homeobox domain
CDD	cd00086	1.80E-8	21	64	No hit	No description
SMART	SM00571	0.004	388	447	IPR018501	DDT domain
PROSITE profile	PS50827	10.218	388	447	IPR018501	DDT domain
Pfam	PF02791	6.6E-6	390	442	IPR018501	DDT domain
Pfam	PF15612	2.1E-5	666	697	IPR028942	WHIM1 domain
Pfam	PF15613	7.6E-11	789	860	IPR028941	WHIM2 domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 1173 aa Download sequence Send to blast
MAAVRKMAAN GLAAKRENTG TKKSPLQIQM LERFYSEVQY PQSEDIAEYA TSVGLTYNQV 60 RIWFKERRRK ERRETESLGA HMEKQLSARS NGFRCSSSRS SSFSRSTMYR TVNLQPEDDR 120 YVDKGMSFTG EKHTLRSQVL FPKDYILRKV FRKDGPPLGS EFDPLPHSAP GHLRDTTDNH 180 FYQNQRVIKK RKIVEPTTQR SSLPCGDNGP VRKHGAGKGL MTVWHAMYSH SSKIQDGSNF 240 IDETGCLRSL RPLDDCGRIE DCDDGKLIQK KVLARKKVVK RTRPPSNKRK VPSSRVTDPK 300 KHPPMECHLS VDESQSPVLQ ANQVTLVDDE ELELRELQAG PNPLRCSAHL SSSGRHGCPL 360 CKDLLSRFPP SSVKMKQPFS TRPWGSSPEM VKKLFQVVRF IYNRFGYMDV HPFTLDELAQ 420 AFHDKDSMLL GEVHVNLLKL LLLNTERGSN DVFVPRSSKD CRFLSFVNFV REQEFDMNFW 480 IKSLNSLTWV EILRQVLVAS GFGSKHHMLN RDFFNKEKNQ MVKYGLRPRT LKGELFALLS 540 KKGSGGLKVS ELAKSPEIVD LSISSTEIEQ LIYSTLSSDI TLFEKIAPSA YRLRVDPRIK 600 GKEDSGSDTE DSGSVDDHSD ASSGADESDG SHEMSFSEHE HRILRRKWKN GHENVNRCSE 660 IDESYSGERW LLGLMEGEYS DLSIDEKLDC LVALMDVVSG ADSAPRLEEP SRVVPSIPRA 720 QPHVSGGKIK KSTRNICQSS DECFNASGSM YGLDSSMHEQ SRSLRSRDYV AYSGRNDTST 780 GVAHQPQVVL LGSDRRYNNY WLFLGPCRAD DPGHRRVYFE SSEDGHWEVI DSPQELLSLL 840 ASLDSRGTRE AYLLASMKKR QTCLFEAMKK HYENRDAVQP AMPSDTSHSE TSSGDGASPK 900 LSSGDGASPT SDIDNASVPT NPAENMINAS SAIAIEVGRR GDEKILKWER SQTFDKWIWT 960 SFYSCLTAVK CGKKSFKESL VRCESCHDLY WRDEKHCRIC HSTFEVSFDL EERYAIHVAT 1020 CRDPEDAYDV PNHKVLPSQL QALKAAIHAI EAHMPEAAFA GLWMKSSHKL WVKRLRRTSS 1080 LAELLQVLVD FVGAMDEDWL YKSSSSVSFC SYLDDIVIYF QTMPQTTSAV ALWVVKLDAL 1140 ITPYLERADS DRALGEESVQ TRTRACGGIA RNR

Sequence ? help Back to Top

Protein Sequence Length: 1173 aa Download sequence Send to blast

MAAVRKMAAN GLAAKRENTG TKKSPLQIQM LERFYSEVQY PQSEDIAEYA TSVGLTYNQV  60
RIWFKERRRK ERRETESLGA HMEKQLSARS NGFRCSSSRS SSFSRSTMYR TVNLQPEDDR  120
YVDKGMSFTG EKHTLRSQVL FPKDYILRKV FRKDGPPLGS EFDPLPHSAP GHLRDTTDNH  180
FYQNQRVIKK RKIVEPTTQR SSLPCGDNGP VRKHGAGKGL MTVWHAMYSH SSKIQDGSNF  240
IDETGCLRSL RPLDDCGRIE DCDDGKLIQK KVLARKKVVK RTRPPSNKRK VPSSRVTDPK  300
KHPPMECHLS VDESQSPVLQ ANQVTLVDDE ELELRELQAG PNPLRCSAHL SSSGRHGCPL  360
CKDLLSRFPP SSVKMKQPFS TRPWGSSPEM VKKLFQVVRF IYNRFGYMDV HPFTLDELAQ  420
AFHDKDSMLL GEVHVNLLKL LLLNTERGSN DVFVPRSSKD CRFLSFVNFV REQEFDMNFW  480
IKSLNSLTWV EILRQVLVAS GFGSKHHMLN RDFFNKEKNQ MVKYGLRPRT LKGELFALLS  540
KKGSGGLKVS ELAKSPEIVD LSISSTEIEQ LIYSTLSSDI TLFEKIAPSA YRLRVDPRIK  600
GKEDSGSDTE DSGSVDDHSD ASSGADESDG SHEMSFSEHE HRILRRKWKN GHENVNRCSE  660
IDESYSGERW LLGLMEGEYS DLSIDEKLDC LVALMDVVSG ADSAPRLEEP SRVVPSIPRA  720
QPHVSGGKIK KSTRNICQSS DECFNASGSM YGLDSSMHEQ SRSLRSRDYV AYSGRNDTST  780
GVAHQPQVVL LGSDRRYNNY WLFLGPCRAD DPGHRRVYFE SSEDGHWEVI DSPQELLSLL  840
ASLDSRGTRE AYLLASMKKR QTCLFEAMKK HYENRDAVQP AMPSDTSHSE TSSGDGASPK  900
LSSGDGASPT SDIDNASVPT NPAENMINAS SAIAIEVGRR GDEKILKWER SQTFDKWIWT  960
SFYSCLTAVK CGKKSFKESL VRCESCHDLY WRDEKHCRIC HSTFEVSFDL EERYAIHVAT  1020
CRDPEDAYDV PNHKVLPSQL QALKAAIHAI EAHMPEAAFA GLWMKSSHKL WVKRLRRTSS  1080
LAELLQVLVD FVGAMDEDWL YKSSSSVSFC SYLDDIVIYF QTMPQTTSAV ALWVVKLDAL  1140
ITPYLERADS DRALGEESVQ TRTRACGGIA RNR

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	66	73	RRRKERRE

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Os.51867	0.0	callus

Expression -- Microarray ? help Back to Top
Source	ID	E-value
GEO	32974141	0.0

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015646956.1	0.0	homeobox-DDT domain protein RLT3 isoform X1
TrEMBL	B8B8L7	0.0	B8B8L7_ORYSI; Uncharacterized protein
STRING	ONIVA07G21870.1	0.0	(Oryza nivara)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP4556	33	50

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G12750.1	1e-142	Homeodomain-like transcriptional regulator