PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID BGIOSGA026335-PA
Common NameOsI_27232
Organism
Oryza sativa subsp. indica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family FAR1
Protein Properties Length: 752aa    MW: 85740.7 Da    PI: 8.4425
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
BGIOSGA026335-PAgenomeRISView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR135.72.8e-1192155172
              FAR1   1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkek 72 
                       +fY++Y++++GF+++ks++k +        r+ +C++egk++ + ++ +k++r r + r+gCka +kvk+  
  BGIOSGA026335-PA  92 DFYERYSYHAGFDIKKSRNKPT-------FREICCTREGKNKYRGDE-SKRERMRGSARIGCKAYVKVKNVI 155
                       6**************9987665.......899************999.999999**************9865 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031017.6E-792154IPR004330FAR1 DNA binding domain
PfamPF105512.1E-21208273IPR018289MULE transposase domain
PROSITE profilePS509669.631467503IPR007527Zinc finger, SWIM-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 752 aa     Download sequence    Send to blast
MESPVHTSTT SPSSRLGVGG DHWGDHHVNA GHPGSPSTPS GSHEGVDRPP CVQACEMNTP  60
EKDRVYRHGS KLREEMVPKV GMVFDSYEEA YDFYERYSYH AGFDIKKSRN KPTFREICCT  120
REGKNKYRGD ESKRERMRGS ARIGCKAYVK VKNVIREGEF VSVRKAANVR AENADDISKL  180
LEFFKECKKE NPKFYWDIKV DEEGIVKNST LFGCALIRDE RAESFQWLFE TFKNCMGDSP  240
SPRCILTDQD QAMAVAVERV FPEAIHRLCM WHIIDGHSDH LNTIFSRNDD IEGEMMVCIN  300
QTYTPTEFEN AWDRFIDKYE LRDSVTLRNL YDLRERWVPA FFKKHYCGRM TSTQRSESFN  360
RMVKSNFVDH QTALHRFARR MLDVVVSRKD KESAETRGCE GVPIVKTPWP FAEQLSRVYT  420
RAVFKVFEDS LHDSVYFRIE LEGSDGIHWV ISHTKRSEKH DWCQRQFKVI VDVDNGNFSC  480
ECLQWEHTGM FCPHLLRAFV HAQVEKIPHM YVLRRYTKQA KSDVNYDRRD RPMAGPDGVK  540
ESYRTKLLSY DAMQIVKLGR RSKVAFDRAT AVLKGLRKQL EEIPPDSDVG VGNAVTSGKD  600
AESVADTMRA GQSMSMSEHD CERVSRRPPP RSMTKGRASE PTEKVKLGAR GDKKCTRGCG  660
WCGLKVGHNS STCPNNPANF KRIAEANNKG KRKRGRPRGS GVGGGRGRKA VRRNLIDEWA  720
EGPVGGECSM RSEEGDDDCS VQSGGDTEDL SE
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0038250.0AP003825.3 Oryza sativa Japonica Group genomic DNA, chromosome 7, BAC clone:OJ1343_D04.
GenBankAP0054520.0AP005452.5 Oryza sativa Japonica Group genomic DNA, chromosome 7, PAC clone:P0453E03.
GenBankAP0149630.0AP014963.1 Oryza sativa Japonica Group DNA, chromosome 7, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025883004.10.0uncharacterized protein LOC112939687
TrEMBLB8B5L50.0B8B5L5_ORYSI; Uncharacterized protein
STRINGOS07T0664100-000.0(Oryza sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP649725
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38180.11e-51FAR1-related sequence 5