PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID BGIOSGA026461-PA
Common NameOsI_30319
Organism
Oryza sativa subsp. indica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family ERF
Protein Properties Length: 230aa    MW: 24952.8 Da    PI: 5.3989
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
BGIOSGA026461-PAgenomeRISView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP258.51.6e-1853103155
               AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                       + ++GVr++  +g+WvAeIr+p   + r +r +lg+f ta +Aa+a++ a+++l+g
  BGIOSGA026461-PA  53 CPFRGVRQRT-WGKWVAEIREP---N-RgARLWLGTFNTALDAARAYDSAARALYG 103
                       679****999.**********8...3.35***********************9986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5103220.29754111IPR001471AP2/ERF domain
SMARTSM003803.5E-2954117IPR001471AP2/ERF domain
PfamPF008475.0E-1255103IPR001471AP2/ERF domain
PRINTSPR003671.3E-95566IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.106.8E-2955110IPR001471AP2/ERF domain
CDDcd000188.65E-2855109No hitNo description
SuperFamilySSF541711.11E-1955110IPR016177DNA-binding domain
PRINTSPR003671.3E-97793IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 230 aa     Download sequence    Send to blast
MEMDIGEGES CCGRRKQQQQ QNISSSKSRK CCPLRRSRKG CMKGKGGPEN QRCPFRGVRQ  60
RTWGKWVAEI REPNRGARLW LGTFNTALDA ARAYDSAARA LYGDCARLNL LLAAATAGAP  120
PAAATPSVAT PCSTNDDSNN SSSTTHQQQL TTMLQLDDDN YTLQPSSSDQ EDFETYVTRL  180
PKAEDFGLEG FQEVPLDVLD EAGGGISIWD LSICPADFMA TAATTTAKSS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A4e-1555112361ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Os.309070.0panicle
Expression -- Microarray ? help Back to Top
Source ID E-value
GEO329933520.0
GEO334400170.0
Functional Description ? help Back to Top
Source Description
UniProtProbable transcriptional activator that binds to the DNA sequence 5'-[AG]CCGAC-3' of the cis-acting dehydration-responsive element (DRE). {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00519DAPTransfer from AT5G18450Download
Motif logo
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Not induced by high-salt and drought stresses. {ECO:0000269|PubMed:20049613}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1081430.0AK108143.1 Oryza sativa Japonica Group cDNA clone:002-139-E11, full insert sequence.
GenBankAP0046230.0AP004623.3 Oryza sativa Japonica Group genomic DNA, chromosome 8, PAC clone:P0705A05.
GenBankAP0054110.0AP005411.3 Oryza sativa Japonica Group genomic DNA, chromosome 8, BAC clone:OSJNBa0044E16.
GenBankAP0149640.0AP014964.1 Oryza sativa Japonica Group DNA, chromosome 8, cultivar: Nipponbare, complete sequence.
GenBankAY3393750.0AY339375.1 Oryza sativa (japonica cultivar-group) Ap22 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015651102.11e-171dehydration-responsive element-binding protein 2C
SwissprotQ84ZA11e-172DRE2C_ORYSJ; Dehydration-responsive element-binding protein 2C
TrEMBLA2YY931e-170A2YY93_ORYSI; Uncharacterized protein
STRINGOS08T0565200-011e-171(Oryza sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP55103454
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G18450.18e-28ERF family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]