PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID BGIOSGA026537-PA
Common NameOsI_30138
Organism
Oryza sativa subsp. indica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family HSF
Protein Properties Length: 373aa    MW: 39945.4 Da    PI: 5.1228
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
BGIOSGA026537-PAgenomeRISView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind112.52.9e-35311222102
                       HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXX CS
      HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkell 94 
                       Fl+k+y++++d++++++isw+++g++fvv+ + efa+++LpkyFkh+nf+SFvRQLn+YgF+k+  ++         weF+++ F++g+++ll
  BGIOSGA026537-PA  31 FLTKTYQLVDDPAVDDVISWNDDGSTFVVWRPAEFARDLLPKYFKHNNFSSFVRQLNTYGFRKIVPDR---------WEFANDCFRRGERRLL 114
                       9*****************************************************************99.........**************** PP

                       XXXXXXXX CS
      HSF_DNA-bind  95 ekikrkks 102
                       ++i+r+k 
  BGIOSGA026537-PA 115 CEIHRRKV 122
                       *****986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.104.0E-3822115IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004151.5E-5927120IPR000232Heat shock factor (HSF)-type, DNA-binding
SuperFamilySSF467855.44E-3528120IPR011991Winged helix-turn-helix DNA-binding domain
PRINTSPR000561.5E-203154IPR000232Heat shock factor (HSF)-type, DNA-binding
PfamPF004471.0E-3131120IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.5E-206981IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS0043407094IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.5E-208294IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 373 aa     Download sequence    Send to blast
MGEPSPPPPA PAAEAAGVGV GQQQRTVPTP FLTKTYQLVD DPAVDDVISW NDDGSTFVVW  60
RPAEFARDLL PKYFKHNNFS SFVRQLNTYG FRKIVPDRWE FANDCFRRGE RRLLCEIHRR  120
KVTPPAPAAT TAAVAAAIPM ALPVTTTRDG SPVLSGEEQV ISSSSSPEPP LVLPQAPSGS  180
GSGGVASGDV GDENERLRRE NAQLARELSQ MRKLCNNIIL LMSKYASTQQ LDAANASSAA  240
GNNNNNNNCS GESAEAATPL PLPAVLDLMP SCPGAASAAA PVSDNEEGMM SAKLFGVSIG  300
RKRMRHDGGG DDDHAATVKA EPMDGRPHGK DEQSAETQAW PIYRPRPVYQ PIRACNGYEY  360
DRAGSDQDGS NST
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5hdg_A3e-263112310112Heat shock factor protein 1
5hdn_A3e-263112310112Heat shock factor protein 1
5hdn_B3e-263112310112Heat shock factor protein 1
5hdn_C3e-263112310112Heat shock factor protein 1
5hdn_D3e-263112310112Heat shock factor protein 1
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Os.277160.0callus| flower| leaf| panicle| stem
Expression -- Microarray ? help Back to Top
Source ID E-value
GEO1154776540.0
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator that specifically binds DNA of heat shock promoter elements (HSE). {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCT8310260.0CT831026.1 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCRA111P18, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025875859.10.0heat stress transcription factor B-2b isoform X2
SwissprotQ6Z9C80.0HFB2B_ORYSJ; Heat stress transcription factor B-2b
TrEMBLA2YXS10.0A2YXS1_ORYSI; Uncharacterized protein
STRINGOS08T0546800-010.0(Oryza sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP12137394
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G62020.15e-66heat shock transcription factor B2A
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Xiang J, et al.
    Heat shock factor OsHsfB2b negatively regulates drought and salt tolerance in rice.
    Plant Cell Rep., 2013. 32(11): p. 1795-806
    [PMID:23949687]