PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

BGIOSGA026709-PA

Common Name

OsI_29816

Organism

Oryza sativa subsp. indica

Taxonomic ID

39946

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa

Family

EIL

Protein Properties

Length: 269aa MW: 30752.6 Da PI: 10.0502

Description

EIL family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
BGIOSGA026709-PA	genome	RIS	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	EIN3	359.5	6.2e-110	38	262	1	230
XXXXXXXXXXXXXXXXXXXXXXX..XXXXX.XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX CS EIN3 1 eelkkrmwkdqmllkrlkerkkqlledkeaatgakksnksneqarrkkmsraQDgiLkYMlkemevcnaqGfvYgiipekgkpvegasdsLra 93 eel +rmwkd+++lkr+ker+++l + ++aa++++k++k++eqa rkk++r QDgiL+YMlk mevcna+GfvYgiip+kgkpv+gasd++ra BGIOSGA026709-PA 38 EELARRMWKDKIKLKRIKERQQKL-ALQQAALEESKTKKMSEQALRKKTARVQDGILRYMLKLMEVCNARGFVYGIIPHKGKPVSGASDNIRA 129 8******************986.577778********************************************************** PP XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX....XX----STTS-HHHHHHHHHHHSSSSSS-TTS--TTT--HHHH---S--HHHHHHT- CS EIN3 94 WWkekvefdrngpaaiskyqaknlilsgesslqtersseshslselqDTtlgSLLsalmqhcdppqrrfplekgvepPWWPtGkelwwgelgl 186 WWkekv+fd ngp+ai+ky+ kn +l +++++ + ++hsl++lqD+tlgSLLs+lmqhc+p+qr++pl+kgv+pPWWP+G+e+ww +lgl BGIOSGA026709-PA 130 WWKEKVRFDVNGPVAIAKYEVKNSMLVDAKRR---GVLNQHSLMDLQDATLGSLLSSLMQHCSPQQRKYPLDKGVPPPWWPSGNEDWWISLGL 219 ***********************99999...88**************************************************** PP -TT--.-----GGG--HHHHHHHHHHHHHHTGGGHHHHHHTTTT CS EIN3 187 skdqgtppykkphdlkkawkvsvLtavikhmsptieeirelerq 230 + + ppy+kphdlkk+wkv+vLt vikhm+p++++ir+++ BGIOSGA026709-PA 220 PMGIS-PPYRKPHDLKKVWKVGVLTGVIKHMAPNFDKIRNCKFL 262 999.9********************************98765 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF04873	1.6E-114	38	264	No hit	No description
Gene3D	G3DSA:1.10.3180.10	1.4E-52	162	265	IPR023278	Ethylene insensitive 3-like protein, DNA-binding domain
SuperFamily	SSF116768	2.48E-49	166	266	IPR023278	Ethylene insensitive 3-like protein, DNA-binding domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 269 aa Download sequence Send to blast
MGNPSILTED LGDTSDFEVD GVENLTENDV SDEEIDAEEL ARRMWKDKIK LKRIKERQQK 60 LALQQAALEE SKTKKMSEQA LRKKTARVQD GILRYMLKLM EVCNARGFVY GIIPHKGKPV 120 SGASDNIRAW WKEKVRFDVN GPVAIAKYEV KNSMLVDAKR RGVLNQHSLM DLQDATLGSL 180 LSSLMQHCSP QQRKYPLDKG VPPPWWPSGN EDWWISLGLP MGISPPYRKP HDLKKVWKVG 240 VLTGVIKHMA PNFDKIRNCK FLYRSLANR

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1wij_A	3e-47	166	257	9	100	ETHYLENE-INSENSITIVE3-like 3 protein
Search in ModeBase

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Os.53403	0.0	callus\| flower\| panicle\| seed

Expression -- Microarray ? help Back to Top
Source	ID	E-value
GEO	32982485	0.0

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor that may be involved in the ethylene response pathway. {ECO:0000269\|PubMed:9215635, ECO:0000269\|PubMed:9851977}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK072462	0.0	AK072462.1 Oryza sativa Japonica Group cDNA clone:J023115E06, full insert sequence.
GenBank	AP005254	0.0	AP005254.3 Oryza sativa Japonica Group genomic DNA, chromosome 8, BAC clone:OSJNBb0064I19.
GenBank	AP005816	0.0	AP005816.3 Oryza sativa Japonica Group genomic DNA, chromosome 8, BAC clone:B1168A08.
GenBank	AP014964	0.0	AP014964.1 Oryza sativa Japonica Group DNA, chromosome 8, cultivar: Nipponbare, complete sequence.
GenBank	CP012616	0.0	CP012616.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 8 sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015648717.1	0.0	ETHYLENE INSENSITIVE 3-like 3 protein
Swissprot	O23116	1e-112	EIL3_ARATH; ETHYLENE INSENSITIVE 3-like 3 protein
TrEMBL	B8BCA7	0.0	B8BCA7_ORYSI; Uncharacterized protein
TrEMBL	B9G1Q4	0.0	B9G1Q4_ORYSJ; Uncharacterized protein
STRING	ORUFI08G22370.1	0.0	(Oryza rufipogon)
STRING	OS08T0508700-01	0.0	(Oryza sativa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP3720	37	79

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G73730.1	1e-108	ETHYLENE-INSENSITIVE3-like 3

Publications ? help Back to Top
Frerigmann H,Gigolashvili T Update on the role of R2R3-MYBs in the regulation of glucosinolates upon sulfur deficiency. Front Plant Sci, 2014. 5: p. 626 [PMID:25426131] Zheng ZL,Zhang B,Leustek T Transceptors at the boundary of nutrient transporters and receptors: a new role for Arabidopsis SULTR1;2 in sulfur sensing. Front Plant Sci, 2014. 5: p. 710 [PMID:25566284] Panda SK,Sunkar R Nutrient- and other stress-responsive microRNAs in plants: Role for thiol-based redox signaling. Plant Signal Behav, 2015. 10(4): p. e1010916 [PMID:25912823] Wawrzyńska A,Sirko A EIN3 interferes with the sulfur deficiency signaling in Arabidopsis thaliana through direct interaction with the SLIM1 transcription factor. Plant Sci., 2016. 253: p. 50-57 [PMID:27968996]