PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID BGIOSGA026934-PA
Common NameOsI_29339
Organism
Oryza sativa subsp. indica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family NAC
Protein Properties Length: 337aa    MW: 36947.7 Da    PI: 5.635
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
BGIOSGA026934-PAgenomeRISView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM151.15.2e-4771401127
               NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpk.....kvka...eekewyfFskrdkkyatgkrknratksgyWka 85 
                       lp+GfrF Ptdeelv++yL++k+ + +++   +i++vd+y+++Pw+Lp      +  +   +  e+yfF++r++ky++g r +rat+ gyWk+
  BGIOSGA026934-PA   7 LPAGFRFFPTDEELVTYYLARKAMDATFTS-AAIRDVDLYTSDPWHLPCdssaaS--TgggGGGECYFFCRRSSKYPSGARVRRATAGGYWKS 96 
                       799************************999.78**************94355431..13334559**************************** PP

               NAM  86 tgkdkevlsk..kgelvglkktLvfykgrapkgektdWvmheyr 127
                       tgkdk v+++  +g lvg+kktLvfy+grap+gekt+Wvmhey+
  BGIOSGA026934-PA  97 TGKDKGVYAAaaGGGLVGTKKTLVFYEGRAPRGEKTSWVMHEYS 140
                       ********99888999***************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019411.1E-524174IPR003441NAC domain
PROSITE profilePS5100553.1577174IPR003441NAC domain
PfamPF023651.0E-258140IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 337 aa     Download sequence    Send to blast
MEEEQRLPAG FRFFPTDEEL VTYYLARKAM DATFTSAAIR DVDLYTSDPW HLPCDSSAAS  60
TGGGGGGECY FFCRRSSKYP SGARVRRATA GGYWKSTGKD KGVYAAAAGG GLVGTKKTLV  120
FYEGRAPRGE KTSWVMHEYS RAPSTNFIRG AQARTHNLLD IIYSEWVICR VFKKQPPIEH  180
WLEMEQEVET TTTTTTTTVQ EHTPNRRRLP PAEAAAAAAP PSGQPWQHTS RRSGDGRAAI  240
DGGNREEEED EHGLAREESS SPVVISSSSR CTSSPSSRLL NHEHLGASSS DDLPELMEFG  300
DIYGGIAAGG PTDQQASSSN SNSICNFLDE PYYCWNF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A3e-41717517166NO APICAL MERISTEM PROTEIN
1ut4_B3e-41717517166NO APICAL MERISTEM PROTEIN
1ut7_A3e-41717517166NO APICAL MERISTEM PROTEIN
1ut7_B3e-41717517166NO APICAL MERISTEM PROTEIN
4dul_A3e-41717517166NAC domain-containing protein 19
4dul_B3e-41717517166NAC domain-containing protein 19
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Os.856570.0callus| panicle| root
Functional Description ? help Back to Top
Source Description
UniProtBinds to the promoter regions of genes involved in chlorophyll catabolic processes, such as NYC1, SGR1, SGR2 and PAO. {ECO:0000269|PubMed:27021284}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Repressed by the microRNA miR164. {ECO:0000269|PubMed:15294871, ECO:0000269|PubMed:17098808}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCP0126160.0CP012616.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 8 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015650320.10.0NAC domain-containing protein 87 isoform X1
SwissprotQ9FLJ23e-54NC100_ARATH; NAC domain-containing protein 100
TrEMBLA2YVI10.0A2YVI1_ORYSI; Uncharacterized protein
STRINGORUFI08G17620.10.0(Oryza rufipogon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP147652122
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G61430.11e-42NAC domain containing protein 100
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]