PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID BGIOSGA026939-PA
Common NameOsI_29330
Organism
Oryza sativa subsp. indica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family M-type_MADS
Protein Properties Length: 96aa    MW: 10628.1 Da    PI: 10.0261
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
BGIOSGA026939-PAgenomeRISView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF87.85.8e-28959151
                      S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
            SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                      kri+n + rqvtfskRr g++KKA ELS+LCdaev +++fsstg+ly+++s
  BGIOSGA026939-PA  9 KRIDNATSRQVTFSKRRSGLFKKARELSILCDAEVGLLVFSSTGRLYDFAS 59
                      79***********************************************86 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006632.73161IPR002100Transcription factor, MADS-box
SMARTSM004323.7E-41160IPR002100Transcription factor, MADS-box
CDDcd002651.71E-45278No hitNo description
SuperFamilySSF554552.75E-33277IPR002100Transcription factor, MADS-box
PRINTSPR004048.1E-30323IPR002100Transcription factor, MADS-box
PROSITE patternPS003500357IPR002100Transcription factor, MADS-box
PfamPF003195.0E-261057IPR002100Transcription factor, MADS-box
PRINTSPR004048.1E-302338IPR002100Transcription factor, MADS-box
PRINTSPR004048.1E-303859IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 96 aa     Download sequence    Send to blast
MGRGKIEIKR IDNATSRQVT FSKRRSGLFK KARELSILCD AEVGLLVFSS TGRLYDFASS  60
SMKSIIERYN ETKEDPHQTM NASSEAKNIP PGIGCG
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5f28_A3e-24179178MEF2C
5f28_B3e-24179178MEF2C
5f28_C3e-24179178MEF2C
5f28_D3e-24179178MEF2C
Search in ModeBase
Expression -- Microarray ? help Back to Top
Source ID E-value
GEO336211141e-144
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in seedling roots and developing seeds. {ECO:0000269|PubMed:14701936}.
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY1776941e-159AY177694.1 Oryza sativa (japonica cultivar-group) transcription factor MADS23 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015650845.13e-56MADS-box transcription factor 23 isoform X1
RefseqXP_015650846.13e-56MADS-box transcription factor 23 isoform X1
RefseqXP_025883353.14e-56MADS-box transcription factor 23 isoform X2
SwissprotQ6VAM43e-58MAD23_ORYSJ; MADS-box transcription factor 23
TrEMBLB8BB081e-64B8BB08_ORYSI; Uncharacterized protein
STRINGORGLA08G0137000.16e-57(Oryza glaberrima)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP12938398
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G14210.11e-44AGAMOUS-like 44
Publications ? help Back to Top
  1. Puig J, et al.
    Analysis of the expression of the AGL17-like clade of MADS-box transcription factors in rice.
    Gene Expr. Patterns, 2013 Jun-Jul. 13(5-6): p. 160-70
    [PMID:23466806]
  2. Yu C, et al.
    The effects of fluctuations in the nutrient supply on the expression of five members of the AGL17 clade of MADS-box genes in rice.
    PLoS ONE, 2014. 9(8): p. e105597
    [PMID:25140876]
  3. Wang H, et al.
    A Signaling Cascade from miR444 to RDR1 in Rice Antiviral RNA Silencing Pathway.
    Plant Physiol., 2016. 170(4): p. 2365-77
    [PMID:26858364]