PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID BGIOSGA027192-PA
Common NameOsI_28781
Organism
Oryza sativa subsp. indica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family B3
Protein Properties Length: 381aa    MW: 43322.4 Da    PI: 8.0895
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
BGIOSGA027192-PAgenomeRISView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B352.68.6e-1731111995
                       HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEE CS
                B3   9 dvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvk 95 
                       +   ++ +++pk+f+++ +g+   + +++le+++ +s +v++  +k+++++++t+GW +Fvk  +L+ gD+++F+++g+s+f   v 
  BGIOSGA027192-PA  31 MGDFQHEMIIPKEFVQRLKGD--IPGEIQLETRNRNSHTVRV--DKTQEKVIFTEGWAQFVKTFDLQMGDSMMFRFNGNSQF--DVI 111
                       5556788********999888..5558***************..*********************************99999..554 PP
2B342.61.1e-13293377999
                       HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE-S CS
                B3   9 dvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfrk 99 
                        +++ + l++ +++++++ ++   +kt++  ++ g +W+++l  + +sg   + +G ++F+++n++ +gD+++F+l ++++ +++v+++r+
  BGIOSGA027192-PA 293 ASGRISSLSIANRYVDNYLQD---EKTIR-LSRLGDKWNIRL--SDSSGNRRMVGGCRKFAEDNDVGVGDICLFELLKNHKCTMKVHIIRA 377
                       45566789*******888433...34788.56799*******..77777777889*********************9998888****9986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.108.7E-2020114IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019366.08E-2120114IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086311.71623116IPR003340B3 DNA binding domain
CDDcd100171.70E-1724114No hitNo description
SMARTSM010199.8E-826116IPR003340B3 DNA binding domain
PfamPF023621.3E-1434109IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.103.7E-17278378IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019363.92E-15279378IPR015300DNA-binding pseudobarrel domain
CDDcd100174.62E-15282376No hitNo description
SMARTSM010190.0012284378IPR003340B3 DNA binding domain
PROSITE profilePS508639.46285378IPR003340B3 DNA binding domain
PfamPF023624.5E-12291377IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 381 aa     Download sequence    Send to blast
MGTSCERCRR RDEQDYRNLD DSQKHFLLTM MGDFQHEMII PKEFVQRLKG DIPGEIQLET  60
RNRNSHTVRV DKTQEKVIFT EGWAQFVKTF DLQMGDSMMF RFNGNSQFDV IIVDQIGREK  120
ACSAVVDDSQ NPNVQERRVD ATETLNSSRA HSQPMPMQST TETVNHSHAR PCPMHTAVDC  180
MPLSHAHPQS MPMQFPTETV NHCHAPTGPM EMPLENVALS HAHARPLQMQ SQPTDRLTQV  240
QRDQDCRVGV IPDPIIGQKT ILSRVQVNVV KRKIQNIGSQ IPIFVSVMGK NNASGRISSL  300
SIANRYVDNY LQDEKTIRLS RLGDKWNIRL SDSSGNRRMV GGCRKFAEDN DVGVGDICLF  360
ELLKNHKCTM KVHIIRAKDI C
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Os.526230.0callus| stem
Expression -- Microarray ? help Back to Top
Source ID E-value
GEO329783770.0
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK0683590.0AK068359.1 Oryza sativa Japonica Group cDNA clone:J013146O10, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015648704.10.0B3 domain-containing protein Os08g0324300
RefseqXP_015648705.10.0B3 domain-containing protein Os08g0324300
RefseqXP_015648706.10.0B3 domain-containing protein Os08g0324300
RefseqXP_015648707.10.0B3 domain-containing protein Os08g0324300
SwissprotQ6Z0D90.0Y8347_ORYSJ; B3 domain-containing protein Os08g0324300
TrEMBLB8B9R00.0B8B9R0_ORYSI; Uncharacterized protein
STRINGORUFI08G11760.40.0(Oryza rufipogon)
STRINGONIVA08G05080.20.0(Oryza nivara)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP124821536
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G18990.12e-15B3 family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]