PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID BGIOSGA027300-PA
Common NameOsI_28563
Organism
Oryza sativa subsp. indica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family WRKY
Protein Properties Length: 567aa    MW: 61825.2 Da    PI: 6.7089
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
BGIOSGA027300-PAgenomeRISView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY955.4e-30245301259
                       --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
              WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                        Dg+nWrKYGqK+vk+se++rsYYrCt ++C +kkkve++  d++vvei+Y+g+Hnhe
  BGIOSGA027300-PA 245 GDGFNWRKYGQKQVKSSENSRSYYRCTNSNCLAKKKVEHCP-DGRVVEIIYRGTHNHE 301
                       6****************************************.***************8 PP
2WRKY100.41.1e-31413470259
                       --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
              WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                       +Dgy+WrKYGqK vkg+++prsYYrCt+ gCpv+k+ve++ +d + +++tYeg+Hnh+
  BGIOSGA027300-PA 413 SDGYRWRKYGQKIVKGNPNPRSYYRCTHDGCPVRKHVEKAPDDDNNIVVTYEGKHNHD 470
                       7********************************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.802.0E-26237303IPR003657WRKY domain
PROSITE profilePS5081121.746239303IPR003657WRKY domain
SuperFamilySSF1182907.72E-24239303IPR003657WRKY domain
SMARTSM007749.4E-33244302IPR003657WRKY domain
PfamPF031061.0E-22246301IPR003657WRKY domain
Gene3DG3DSA:2.20.25.804.6E-31406472IPR003657WRKY domain
SuperFamilySSF1182901.7E-27407472IPR003657WRKY domain
PROSITE profilePS5081132.799407472IPR003657WRKY domain
SMARTSM007742.0E-36412471IPR003657WRKY domain
PfamPF031064.3E-26414470IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 567 aa     Download sequence    Send to blast
MPDGYPAAPP GMERPAPEAA AAAAEPPGAK AEEEEEGPKD PGVKGTGKEK ETEKVEAEKK  60
MEGKGKGKES MEVEEEGKEK EAKGKESMEV EEGKEKEGKG KVKEKEKETK VKVKEEGGEE  120
KEKGKVEVVE AKRRPAGVGA ETPILAVPMV AVPCFLASPA FAGHFSMSHQ AALASVTAQA  180
QIQLQSPTTP YSEGLPSPFP ITPKAVMPLQ RSPSGTEGSV RRSVLEKSAS FQSRPHNHVS  240
VNMVGDGFNW RKYGQKQVKS SENSRSYYRC TNSNCLAKKK VEHCPDGRVV EIIYRGTHNH  300
EPPQKTRFVK ERVAHITASS GDDETLRLVN NEIIESPSPG CKLEPGAVSE ASEQQLFCSS  360
DCEGDAGNKS EDDHPSTEPQ PKRSRIIETS TPLTPVLRTV REQKIIVQAG KTSDGYRWRK  420
YGQKIVKGNP NPRSYYRCTH DGCPVRKHVE KAPDDDNNIV VTYEGKHNHD QPFRNNSESK  480
DGPVPMIIPA ETTSEQPSTM TSTSEQKQPI SLLKDGGDEP MKGKTSEIGG EKAVESAQTL  540
ISIKTNPDDM KNTLLKDTSA VVPVQNN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A2e-254144721977Probable WRKY transcription factor 4
2lex_A2e-254144721977Probable WRKY transcription factor 4
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Os.575950.0callus| flower| leaf| seed| stem
Expression -- Microarray ? help Back to Top
Source ID E-value
GEO833202560.0
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankDQ2981860.0DQ298186.1 Oryza sativa (japonica cultivar-group) WRKY transcription factor 82 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015650462.10.0probable WRKY transcription factor 32 isoform X1
TrEMBLB8B9000.0B8B900_ORYSI; Uncharacterized protein
STRINGOGLUM08G09260.10.0(Oryza glumipatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP58203455
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G13960.15e-64WRKY DNA-binding protein 4