PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID BGIOSGA027488-PA
Common NameOsI_28165
Organism
Oryza sativa subsp. indica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family WRKY
Protein Properties Length: 901aa    MW: 100173 Da    PI: 8.2781
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
BGIOSGA027488-PAgenomeRISView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY44.92.3e-14103160259
                       --SS-EEEEEEE--TT-SS-EEE.EEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
              WRKY   2 dDgynWrKYGqKevkgsefprsY.YrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                       dDg++Wr  Gq +++g  +p  + Y+C+ ++C v+k + rsa d++++e++ +g Hnh+
  BGIOSGA027488-PA 103 DDGFHWRMCGQSTIQGGLCPTVFsYQCALPNCGVRKSITRSA-DGQTIETVCKGCHNHP 160
                       8*******************9988******************.***************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1182902.75E-1496161IPR003657WRKY domain
PROSITE profilePS5081112.397162IPR003657WRKY domain
Gene3DG3DSA:2.20.25.801.2E-1298161IPR003657WRKY domain
SMARTSM007749.1E-7102161IPR003657WRKY domain
PfamPF031064.4E-13103160IPR003657WRKY domain
SMARTSM006141.1E-16275326IPR003656Zinc finger, BED-type
PROSITE profilePS508089.908275334IPR003656Zinc finger, BED-type
SuperFamilySSF576671.31E-7278326No hitNo description
PfamPF028921.0E-6290333IPR003656Zinc finger, BED-type
SuperFamilySSF530982.65E-55411742IPR012337Ribonuclease H-like domain
PfamPF143721.6E-19652732IPR025525hAT-like transposase, RNase-H fold
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 901 aa     Download sequence    Send to blast
MATPPPPRTG DRNGDASPCW KYLFPSFGSC AGLPSWKANR IWRINQDNRS TPWLTKGFHP  60
FSPFMLAPST TMQQHVGSSS STPVIQVAAL PSHAYYGNID VADDGFHWRM CGQSTIQGGL  120
CPTVFSYQCA LPNCGVRKSI TRSADGQTIE TVCKGCHNHP RQSLRWLGDG SERLEPISQE  180
IVLLEASDAS GAAGGPSVPG TGNGHGQSSG SSDSCRDDDG DLGIDGNASV GDANAVKSGQ  240
VPAPAKEITV HSACEVDILN NSVRHENPQP RKKVRSKSTV WEEFEVVLID GKVQTAECKH  300
CKKGLSAKTS GGTSHLIRHL KICPAQHGTS RVQKKCSSLA DLPIVKSWKD DQESSLDEII  360
RSIVSNLCPF SAMYSASFAQ FLAGRNPVLN MVQQATVEEK FLSVFHNEKM KLKEKITATP  420
GGVFLSLGEW QRLFYIQVRV ACLTVHFIDE DWKINRKTIR CSLSVFGKSD ILSLYPHWQS  480
DIVLAEKVLK EVVQDWGLLD KLLGVTLQRS VDKKAPLHLE DDITGRNYLL SKCRLLSIPC  540
MVDALHELMD STVLDMESTW SHYMTSSPER KQKYQEILSQ LHLDRPSLGS KGWYFTFYFS  600
EAALQFIKSF PLPDAKPNCQ SGPWEPSFDD LEATENYCKI ARSAYRVIKV VSGPHNMTFN  660
SYFHVIWSLR AAIQELPSIK NIGRVFDVAY MQKKFDRNWK KWYLWLSIAV VLDPRYKLGF  720
IEFCFRQAFS HVAGMYFSEP NIAEEETEQV PGADRYFDAL EGPELETLRA TETTVLPKDE  780
KWPFLLRFPI SAFGMCLGVP ARQPGGEPRA MVDRAGTDGA RLLHLPAQGR VLLRVRGGAA  840
GVLPPDPRRL LRAVDRLPLP RPGRAPAGDE GAPRRLVGPV ETLMAVKKFM QVISHNIYNP  900
P
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Os.269460.0callus| leaf| seed
Expression -- Microarray ? help Back to Top
Source ID E-value
GEO329889050.0
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1036960.0AK103696.1 Oryza sativa Japonica Group cDNA clone:J033136J23, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015648157.10.0zinc finger BED domain-containing protein RICESLEEPER 2-like isoform X1
RefseqXP_015648158.10.0zinc finger BED domain-containing protein RICESLEEPER 2-like isoform X2
TrEMBLB8BBN20.0B8BBN2_ORYSI; Uncharacterized protein
STRINGORUFI08G06360.10.0(Oryza rufipogon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP140321024
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G13960.13e-12WRKY DNA-binding protein 4